Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 >seq1 Length=7344524 Score = 174 bits (192), Expect = 2e-38 Identities = 404/602 (67%), Gaps = 14/602 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| || || || ||||| | |||||| || | || || || || || || | Sbjct 2684073 ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGA 2684014 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | | || || ||||| | |||||||| || | ||| || || || || || |||| Sbjct 2684013 AGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAG 2683954 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 36329 ||||||| || || || ||||| |||||||| || || | ||| | | || | | Sbjct 2683953 AAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCATTCT 2683894 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 || ||||| ||||| || || || || ||||| || || ||||| || | Sbjct 2683893 CA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGG 2683837 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || || || |||| |||||| || | ||||||| ||| || || || | || | Sbjct 2683836 CGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGT 2683777 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | ||||| || || || || || || ||||| |||||||| || | ||||| | Sbjct 2683776 AAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCG 2683717 Query 36510 TAATCTGTACTTCTG-TACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCAC 36566 || |||||| || | |||||| ||||| || | || || || || || |||||| Sbjct 2683716 TATACTGTACCTCGGCTACAAA---GTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAG 2683660 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTT-- 36623 ||| |||||||| |||| |||||||||||| || | || | | || |||||| Sbjct 2683659 AGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGT-TTAGTTTG 2683601 Query 36624 -TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 |||||||||| | | |||| | || | || ||| | ||||| || | || Sbjct 2683600 CTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCT 2683541 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 || | ||| ||||| ||||||||||| || || || || || | |||||||| | Sbjct 2683540 TCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGA 2683481 Query 36743 TT 36744 || Sbjct 2683480 TT 2683479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166777718880