Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq198 147 2e-30 seq201 82.4 7e-11 seq19 82.4 7e-11 >seq198 Length=250510 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 ||| || ||||| | ||| ||| || || |||||| |||||| || || || ||||| Sbjct 63942 CGTCACCTGAGCAACCAGCCGCGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCC 64001 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTA 21115 ||| |||||||| ||| | |||||||| ||||||||||||||||||| |||||||| Sbjct 64002 GAGACCCATGTCCGCGCTGCGCTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTA 64061 Query 21116 AAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175 |||||| || || | ||| || || ||||| |||||| ||||||||| |||||||| Sbjct 64062 AAACTGGCAGAACATGTGGCACGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCA 64121 Query 21176 CGCGCACATAACGATGCGCCGATC 21199 || | | ||||| | ||| || Sbjct 64122 GGCAGAGAGTACGATTCTCCGGTC 64145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 21428 GTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCT 21487 || |||| |||| | ||||||||||| ||||||| ||||||| | ||| ||||| | Sbjct 65231 GTTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCG 65290 Query 21488 TTTGGTGGTTAACAGAGGAAA---CTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAA 21544 |||||||| | ||| || || ||| ||||| ||| | | || ||| | ||||| Sbjct 65291 CTTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCGAA 65350 Query 21545 CACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCACGCCGTGTT 21594 | |||| ||| ||| || || | |||| |||| ||||||||| || Sbjct 65351 CTTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTT 65400 >seq201 Length=246981 Score = 82.4 bits (90), Expect = 7e-11 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 |||||| || | ||||||||| || | || ||||| || || || ||| || ||| Sbjct 13770 TGGTTGGAATAGATGTGGGCGTCGCCGATGGAATGCACGAAATCGCC-GGGCTCGTACCC 13828 Query 20997 G-TGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 | |||| || || | || | || || ||||| ||||||||| || || || || Sbjct 13829 GGTGACATGGGCCAGCATGACCAGAAGCAGCGCGTAAGAGGCGATGTTGAAGGGCACGCC 13888 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGG-ACAGCT--CCCCCCGAGCCAC 21112 ||| ||||||||| || | ||||||||||| ||||| ||||| || |||||| | Sbjct 13889 CAGGAACATGTCGGCCGAACGCTGGTACAGCT-GCAGGTGCAGCTTCCCGCCCGAGATCC 13947 Query 21113 GTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172 | | ||| |||| |||||| || || || |||||| ||| || || ||||| Sbjct 13948 G--CACCTGCCACAGGGTGTGACAGGGGGGCAGCGCCATCTCGTCGACCTCGGCCGGGTT 14005 Query 21173 CCACGC 21178 ||| || Sbjct 14006 CCAGGC 14011 >seq19 Length=1029424 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| | ||| | ||| ||| || ||||| ||||| || ||||| |||| | Sbjct 784995 TGGTTCTGGTACAGGTGACAGTCGCCGAAGGTATGCACGAACTCTCCAACCTCCAGGTCG 785054 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || |||| | ||| || || |||||| ||| || || ||||| || || Sbjct 785055 CACTGTTGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCC 785114 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG-CTCCCCCCGAGCCACGTA 21115 ||| || ||||||| | |||||| ||||||||||| || || || || |||||||| Sbjct 785115 AGGAACAGGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCG-GCCACGTA 785173 Query 21116 AAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| ||| ||| ||||| | |||||||| || Sbjct 785174 GAACTGGAACAGGCAGTGGCAAGGCGCCAGAGCCATGCG 785212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772183703360