Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 8e-11 >seq1 Length=7344524 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 52840 GCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATG 52899 ||||| || |||||||| || ||| | ||||| || | |||||| | || | || ||| Sbjct 2684133 GCCGTAGAAATTGAAAAGGAATTTGTAACGGATGCCCTCCCCGTAGGACTGATTGGTATG 2684192 Query 52900 AACGC-GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTG 52950 || || |||| |||||||| |||||||||||||||| || ||| | ||| || Sbjct 2684193 AATGCCGACC-TGATGTGCCAGTACATCGAGTTTGTAGCCGACCGCCTGCTG 2684243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059461014400