Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq9 86.0 9e-12 >seq1 Length=7344524 Score = 194 bits (214), Expect = 2e-44 Identities = 495/746 (66%), Gaps = 13/746 (2%) Strand=Plus/Minus Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||||| || || ||| || || || || | || | |||||| | |||||| ||| Sbjct 2684195 ATTCATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTAC 2684136 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCG---GTGGATGCAATAAATGTT 49948 |||| | |||||| ||| || || |||| | | ||||||| | | | | Sbjct 2684135 GGCATTGGCAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGTGA-TCAT 2684077 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | ||| |||||| || || || ||||||| |||||| || | || || | || || | Sbjct 2684076 TGTACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAG 2684017 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 | || | || || ||||| | |||||||| || | ||| || || || || || | Sbjct 2684016 AGAAGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAAC 2683957 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 ||||||||||||| || || ||||| |||||||| | || | ||| | | | Sbjct 2683956 CAGAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCAT 2683897 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | ||| ||||| ||||| || || || || ||||| || || || || | Sbjct 2683896 TCTCA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGA 2683840 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 |||| || || || |||| |||||| || | ||||||| ||| || ||||| | || Sbjct 2683839 TGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGG 2683780 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 || | ||||| || || || || || |||||||| |||||||| || | |||| Sbjct 2683779 AGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCT 2683720 Query 50309 CGGTAATCTGCACTTCTG-TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 | ||| ||| || || | |||||| | | | || | || || || || || |||||| Sbjct 2683719 CCGTATACTGTACCTCGGCTACAAAGTTCTCC-GCCAGGTTCTCGTTTACGATCCCGTCA 2683661 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT-- 50425 ||| |||||||| |||| |||||||||||| || || || | | |||||| Sbjct 2683660 GAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGTTTG 2683601 Query 50426 -TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 |||||||||| | | |||| | || | || ||| | ||||| || | || Sbjct 2683600 CTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCT 2683541 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || | ||| ||||| ||||||||||| || ||||| ||||| | |||||||| | Sbjct 2683540 TCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGA 2683481 Query 50545 TTTGGATTTGGTGCAAGGATCGGTTC 50570 || || || | | | |||||| || Sbjct 2683480 TTCGGGTTGTCTACCAAGATCGGCTC 2683455 >seq9 Length=1386778 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| ||||| || | || || | ||||| |||||||| || Sbjct 883933 CAGGCGAAGTCGCAGTGCAGGCCCTCATCGCGGCTGATCATCTCGTTCGAAAACGTCAGC 883874 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| || || ||||| || ||||| || |||| |||| || ||| || ||||| Sbjct 883873 CCGGGCATCAGACCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTCCCCGAGAAGAA 883815 Query 50079 GATTCC 50084 || || Sbjct 883814 AATGCC 883809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262227840480