Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 199 5e-46 seq9 86.0 8e-12 >seq1 Length=7344524 Score = 199 bits (220), Expect = 5e-46 Identities = 424/626 (68%), Gaps = 14/626 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| || || || ||||||| ||||||||| | || || || || || || | Sbjct 2684073 ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGA 2684014 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | | || || ||||| | |||||||| || | ||| || || || || || |||| Sbjct 2684013 AGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAG 2683954 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 42236 |||||||||| || || ||||| |||||||| || || | ||| | | || | | Sbjct 2683953 AAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCATTCT 2683894 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || ||||| ||||| || || || || ||||| || || || || |||| Sbjct 2683893 CA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGG 2683837 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | || || || |||| |||||| || | ||||||| ||| || ||||| | || | Sbjct 2683836 CGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGT 2683777 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | | || || || || || || || |||||||| |||||||| || ||||||| | Sbjct 2683776 AAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCG 2683717 Query 42417 TAACCTGTACTTCTG-TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || |||||| || | |||||| | | | || | || ||||| || || |||||| | Sbjct 2683716 TATACTGTACCTCGGCTACAAAGTTCTCC-GCCAGGTTCTCGTTTACGATCCCGTCAGAG 2683658 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTAATT-- 42530 || |||||||| |||| |||||||||||| || | | ||||| || ||| || Sbjct 2683657 GCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTC--GT-TTAGTTTG 2683601 Query 42531 -TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 |||||||||| | | |||| | || | || || | ||||| || | ||| Sbjct 2683600 CTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCT 2683541 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || | ||| ||||| |||||| |||| || || || ||||| | |||||||| | Sbjct 2683540 TCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGA 2683481 Query 42650 TTTGGATTTGGTGCAAGGATCGGTTC 42675 || || || | | | |||||| || Sbjct 2683480 TTCGGGTTGTCTACCAAGATCGGCTC 2683455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || ||||| ||| |||| | || || ||||| |||| ||| | || || || Sbjct 2685171 ATGCTATCTTCCGTCATCGACAAAAGGAAGCAGCTCGACAATTGTGGGCGTGGTGTGGCC 2685112 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 |||||||| | |||||||| |||||| ||||||| || | ||||| || || |||||| Sbjct 2685111 GCATTAAAGAGGGTAGGAGTAGCGTGGATAAACCACTTCTGAGACATCAGGTTATACGTC 2685052 Query 72484 TCAATAGCTGATTCT--ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 || | || | ||| ||||| | || || |||||||| || ||||| ||||||| Sbjct 2685051 TCCA--GCACACTCTCAATATCTGTTCCGTGGATGCCTACCGCAACGCGCATCAACATAT 2684994 Query 72542 GCTGAGGTCTTTCAACGATCTTG 72564 |||| || | || || | |||| Sbjct 2684993 GCTGCGGACGCTCCACCACCTTG 2684971 >seq9 Length=1386778 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||||||||| |||||||| | || || | ||||| |||||||| || Sbjct 883933 CAGGCGAAGTCGCAGTGCAGGCCCTCATCGCGGCTGATCATCTCGTTCGAAAACGTCAGC 883874 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| || || ||||| || ||||| || || | |||| | | | || || ||||| Sbjct 883873 CCGGGCATCAGACCCCGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGCTCCCCGAGAAGAA 883815 Query 42184 GATTCC 42189 || || Sbjct 883814 AATGCC 883809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133059076320