Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq115 100 4e-16 seq296 95.1 2e-14 seq9 95.1 2e-14 >seq115 Length=378902 Score = 100 bits (110), Expect = 4e-16 Identities = 250/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 125223 GAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC 125282 |||| | |||||| ||||| ||||| ||| || |||||| | ||| || ||||| Sbjct 238112 GAGGCGCGGTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGGTGTAC 238171 Query 125283 TCTACACTGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTA 125337 | ||||| |||| ||| | |||| |||| | | ||| || || | Sbjct 238172 AGTCTGCTGATCGACACCTACGTCAAGGACGCG-TCCGAGAAGGCC-CACCTGTTC---A 238226 Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG 125397 |||| || || || ||||| | | || | ||||| |||| | | |||||| | Sbjct 238227 ACGCCATGGAGACCGTGCCTTGCGTGCGAAGGAAGGCGAGGTGGGCGCTGCGGTGGTGCA 238286 Query 125398 ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 | ||| | | || | ||| || | || || || ||||| ||||| |||||||||| Sbjct 238287 ACCCGGACCTGGCGTCCTTCGCGGAGCGGCTCGTTGCGTTCGCGGCCGTGGAGGGCATCT 238346 Query 125458 TCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 |||| || || || || ||| ||| |||| |||||||| |||||||| || |||||||| Sbjct 238347 TCTTCTCCGGCAGCTTCTGC-GCCGTCTTCTGGCTCAAAAAGCGCGGCCTGATGCCCGGC 238405 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATT 125576 ||| | |||||| | || || ||||||||||| ||| ||||| || Sbjct 238406 CTGTGCTTCTCGAACGAGCTCATCAGCCGCGACGAGGGCCTGCACACCGACTTCGCTTGC 238465 Query 125577 CTACTGTTTCGCAA 125590 |||||||| || || Sbjct 238466 CTACTGTTCCGTAA 238479 >seq296 Length=147625 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 69894 TACCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCGTCATCGAGGAGCTCTTGTGG 69952 |||||||| | || || |||| || || || ||||| || | |||||||| |||||| Sbjct 113580 TACCTCTGCTTACCACTAAGAAGGTTTTCTGGAAAGGG-GTTGTTGAGGAGCTGTTGTGG 113638 Query 69953 ATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGC 70012 ||||| || || || | |||||| ||||| |||||||| || ||| | Sbjct 113639 ATGATCTCTGGTAGCACGGACGCCAAAAAGCTGTCATCGAAGGGTGTCAGAATCTGGGAC 113698 Query 70013 GGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGAT 70072 |||||| | ||| ||||||||||| | ||||||||||| | | || || Sbjct 113699 GGCAACTCTTCACGAGAGTTTTTGGATTCGATTGGCTTCACCGATCGCAGCGTTGGAGAC 113758 Query 70073 CTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAG 70132 | || || ||||| || ||||||||| | |||| ||| | ||||| || ||||| | Sbjct 113759 ATTGGTCCGGTGTATGGTTTCCAGTGGCGCCACTTCGGCGCGAAGTACGTTGACTGTAAC 113818 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCA 70161 || || || | || ||||| || || || Sbjct 113819 ACTGATTACACCGGACAGGGAGTAGACCA 113847 >seq9 Length=1386778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 125449 AGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||||| ||||| ||||| || || |||| ||||||| |||||||||||||| || || Sbjct 883807 AGGGCATTTTCTTCTCGGGGAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGTCTG 883865 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| |||||| |||||| | || || || |||||||| ||||| ||| Sbjct 883866 ATGCCCGGGCTGACGTTTTCGAACGAGATGATCAGCCGCGATGAGGGCCTGCACTGCGAC 883925 Query 125568 TTTGCC 125573 || ||| Sbjct 883926 TTCGCC 883931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052419308320