Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq273 96.9 1e-15 seq2 86.0 2e-12 >seq273 Length=166498 Score = 96.9 bits (106), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 17815 GGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGAACGCCTGGAGTAATCTG 17874 ||||||||||| ||||||||||| ||||||||||||||||||| | | | || | | Sbjct 85648 GGAGACGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGA--GTAGGCGGGAAACCG 85591 Query 17875 GGTCGAGGGTTCGAATCCCTCCGTCTCCGCCA 17906 |||||||||||||||||| ||||||||||| Sbjct 85590 TCTCGAGGGTTCGAATCCCTTCGTCTCCGCCA 85559 >seq2 Length=6328565 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 17815 GGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGA--ACGCCTGGAGTAATC 17872 ||||| ||||| ||||||||||| ||||||||||||||||||| | || | | || | Sbjct 1935087 GGAGAGGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGAGTAGGC---GGGCAA-C 1935142 Query 17873 TGGGTCGAGGGTTCGAATCCCTCCGTCTCCGCCA 17906 | |||||||||||||||||| | ||||||||| Sbjct 1935143 CGTCTCGAGGGTTCGAATCCCTTCCTCTCCGCCA 1935176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154267459018456