Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq19 118 2e-21 seq6 113 8e-20 seq5 107 3e-18 seq3 86.0 1e-11 >seq19 Length=1029424 Score = 118 bits (130), Expect = 2e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||| Sbjct 39229 TGGTGGGCCCAGCTGGACTCGAACCAGCGACCAAGGGATTATGAGTCCCCTGCTCTAACC 39170 Query 272932 AACTGAGCTATAGGCCCTTT 272951 ||||||||||||||||| || Sbjct 39169 AACTGAGCTATAGGCCCGTT 39150 >seq6 Length=3173221 Score = 113 bits (124), Expect = 8e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 2219787 AAAATGGTCGGGGTAGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 2219728 Query 273327 ACCA-ACTGCGCTACACTCCGT 273347 |||| ||||||||| || |||| Sbjct 2219727 ACCAGACTGCGCTATACCCCGT 2219706 >seq5 Length=3486096 Score = 107 bits (118), Expect = 3e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||| ||||||| || | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1540206 AAAGTGGTCGGGGTAGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 1540147 Query 273327 ACCA-ACTGCGCTACACTCCG 273346 |||| ||||||||| || ||| Sbjct 1540146 ACCAGACTGCGCTATACCCCG 1540126 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 549880 ATGGTGGGCCCGGAAGGACTTGAACCTTCGACCTGCCGATTATGAGTCGGATGCTCTAAC 549939 Query 272931 CAACTGAGCTATAGGCCCTTTT 272952 || |||||||| ||||| ||| Sbjct 549940 CAGCTGAGCTACGGGCCCCTTT 549961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 |||||||| |||| |||||||||| |||||| ||||||||||||| |||||||||| Sbjct 1550022 TGGCTCCGCCTGCTGGGCTCGAACCAGCGACCCAATGATTAACAGTCATTTGCTCTACCA 1550081 Query 271801 ACTGAGCTATCACGGAAT 271818 ||||||||| |||||| Sbjct 1550082 ACTGAGCTAAGGCGGAAT 1550099 >seq3 Length=4400433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 266721 TGGTGCCGCCACTCCGAATCGAACGGAGGACCTACGCATTACAAGTGCGTTGCTCTACCT 266780 ||||||| |||| | || |||||| | ||||||||| ||||||| | |||||||||||| Sbjct 2533493 TGGTGCCCCCACACGGACTCGAACCGCGGACCTACGGATTACAAATCCGTTGCTCTACC- 2533435 Query 266781 AGCTGAGCTATAGCGGC 266797 ||||||||||||| ||| Sbjct 2533434 AGCTGAGCTATAGGGGC 2533418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896932592991680