Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq2 87.8 1e-12 seq458 84.2 2e-11 seq164 84.2 2e-11 >seq5 Length=3486096 Score = 100 bits (110), Expect = 2e-16 Identities = 124/167 (74%), Gaps = 7/167 (4%) Strand=Plus/Minus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| || || || | ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 1524032 CTTGATCAGCCCGGTTATAACATCAACGGAAGGCCGCTGCGTCGCCAGCACCAGATGAAT 1523973 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTG 99510 |||||||| ||||| ||||| ||||| ||| | || | || ||||| |||| ||| Sbjct 1523972 TCCGGCCGCGCGCGCTTTCTGTGCGATACGGGCGATAAGCTG--CTCAA---CTTTTTTG 1523918 Query 99511 TAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGAT 99557 || |||||| | ||||| | ||| || | ||| || || || Sbjct 1523917 CCCACAATCATCATCATGTCAGCAAATTCGTCAATCACGACGACAAT 1523871 >seq2 Length=6328565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 177/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 99603 CATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAG-CCACCGCAGCGTTTTCACCGCCT 99661 ||||| | ||| ||||| |||||||| |||| || |||| ||| | ||| |||| Sbjct 5869494 CATCTTCTTGTAGCGGTCTTCCATCTC-ACGGACAGTCCACTTCAGGGCAACCACGGCCT 5869552 Query 99662 CGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCT 99721 || | || || || || ||| || || || ||||| |||| || | || | Sbjct 5869553 TGTTCGGATCGGTGACAACAGGCGTCAGCAGATGTGGGATGCCGTCATAGATCGAAAGTT 5869612 Query 99722 CGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGC 99780 | | ||| || |||||||||||||| | ||| | | || || ||| |||||| ||| Sbjct 5869613 CCAG-CATCTTCGGGTCGATCATGATCATCTTGCACTGTTCCGGTGTCAGCCGGTAAAGC 5869671 Query 99781 AGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCAC 99839 ||||| | | ||| | |||||| ||| | ||| || ||||| ||||| | || || || Sbjct 5869672 AGCGACAGGATCATGGTGTTGATCGAAAC-GGATTTACCCGAACCGGTGGTCCCGGCGAC 5869730 Query 99840 CAGCAGATGCGGCAT 99854 ||| || |||||||| Sbjct 5869731 CAGAAGGTGCGGCAT 5869745 >seq458 Length=61738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 99772 CGGTAGAGCAGCGAAACCAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCG 99829 |||||||||||||| | | ||| | ||||||| || | ||||||||||| ||||||| Sbjct 11353 CGGTAGAGCAGCGACAGGATCATCGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTCG 11410 Query 99830 CGCCAGCCACCAGCAGATGCGGCATCTTAGCCAG 99863 || || |||||||||||||||||||| || || Sbjct 11411 TTCCGGCGACCAGCAGATGCGGCATCTTCGCAAG 11444 >seq164 Length=288795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/257 (68%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 99655 ACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGG 99714 ||||||| | || |||||||| || || |||||||| || || |||| ||| Sbjct 143608 ACCGCCTTTTTAGGGTCTGTAACGACCGGAGACAGAAGGTGCGGAATGCCGTCGTAAACC 143667 Query 99715 GTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCA---GGGGTCGC 99770 | || || | ||| |||||||||||||| | || | | |||| || ||| Sbjct 143668 GACAGTTCCAG-CATCTTGGGGTCGATCATCACAAG---GCGCAGATCGTCCGGCGTCAG 143723 Query 99771 CCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGC 99830 | |||||||||||| | | ||| | |||||| | ||||||||||| ||||| | Sbjct 143724 CTTGTAGAGCAGCGACAGGATCATCGTGTTGATCGCGACCGACTTGCCCGAACCGGTGGT 143783 Query 99831 GCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGAC 99890 || || | ||| || || |||||||| ||||||||| | ||| | ||| ||| Sbjct 143784 CCCCGCGATCAGAAGGTGGGGCATCTTGGCCAGGTTCGCGACGATCGGGTCGCCGCCGAT 143843 Query 99891 GTCCTTGCCCACTGCCA 99907 ||||||||| | |||| Sbjct 143844 GTCCTTGCCAAGCGCCA 143860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354640036139352