Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq493 1498 0.0 >seq493 Length=52014 Score = 1498 bits (1660), Expect = 0.0 Identities = 886/922 (96%), Gaps = 1/922 (0%) Strand=Plus/Plus Query 36716 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 36775 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 36776 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 36835 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 36836 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 36895 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 36896 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 36955 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 51332 Query 36956 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 37015 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 51333 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 51392 Query 37016 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 37075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51393 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 51452 Query 37076 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 37135 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 51453 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 51512 Query 37136 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 37195 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51513 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 51572 Query 37196 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGC-TTTTTTGATTTCAGAATTAGCCTG 37254 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 51573 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 51632 Query 37255 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 37314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51633 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 51692 Query 37315 GCAAGCATAAGCACACAGAATATGAAGCCTGCTGCCAGAAAAATGCATTCTGTTGTTGTC 37374 ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 51693 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCCGTGGTTGTC 51752 Query 37375 ATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCGCCGCCATCATTTCCAGCTTTTGTGAAA 37434 || || ||| |||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 51753 ATACCTGGTTTCTCTCATCTGCTTCTGCTTTCGCCACCATCATTTCCAGCTTTTGTGAAA 51812 Query 37435 GGGATGTGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 37494 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51813 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 51872 Query 37495 CTCCAATTTGAGCGAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACGGGAGATG 37554 |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 51873 TTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATG 51932 Query 37555 CTTTGTGCATACAGCTCCCCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 37614 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 51933 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 51992 Query 37615 GGGATTTCTGATAACAGAAAGG 37636 ||||||| ||||||||||||| Sbjct 51993 TGGATTTCGGATAACAGAAAGG 52014 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 36408 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 36467 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 36468 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 36524 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 36408 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 36467 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 36468 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 36524 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29830 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 29889 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 29890 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 29946 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29830 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 29889 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 29890 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 29946 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 138 bits (152), Expect = 4e-28 Identities = 175/238 (74%), Gaps = 17/238 (7%) Strand=Plus/Plus Query 30453 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 30512 ||||||| |||||||||||| |||||||||| | ||||| ||||||||| || |||| Sbjct 51138 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 51197 Query 30513 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 30572 | || || |||| ||||||||| || ||||||||||||||||||||||| ||||| Sbjct 51198 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 51257 Query 30573 ATGAGTAGCAGATGGGGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGA 30624 |||||| |||||| || | | | ||| |||| || |||| | | Sbjct 51258 ATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG----- 51309 Query 30625 TTGCGCTGCAATTCTTCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 30681 |||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 51310 TTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 51367 Score = 125 bits (138), Expect = 3e-24 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 33951 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 34010 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 47254 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 47313 Query 34011 GCGAGGATTGTTAT 34024 |||||||||||||| Sbjct 47314 GCGAGGATTGTTAT 47327 Score = 125 bits (138), Expect = 3e-24 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 33951 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 34010 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 50034 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 50093 Query 34011 GCGAGGATTGTTAT 34024 |||||||||||||| Sbjct 50094 GCGAGGATTGTTAT 50107 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 33584 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 33643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47069 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 47128 Query 33644 TACGTCT 33650 ||||||| Sbjct 47129 TACGTCT 47135 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 33584 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 33643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49849 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 49908 Query 33644 TACGTCT 33650 ||||||| Sbjct 49909 TACGTCT 49915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191447935824352