Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq493 408 9e-110 >seq493 Length=52014 Score = 408 bits (452), Expect = 9e-110 Identities = 387/493 (78%), Gaps = 1/493 (0%) Strand=Plus/Plus Query 12507 CGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCGACTAACAGCACGTCTGAAACGCTCGCCG 12566 || |||| || | || |||||||| || || || |||||||||||||||||||| || | Sbjct 32321 CGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCTTGCTG 32380 Query 12567 CAACACCAAAAGCCGTTAAGACGGTAATGGATGAAACGAACAAGAAAGCGCCATTAAACA 12626 |||| ||||| || |||||| |||||||||||||||||||| ||||| ||| | ||| Sbjct 32381 CAACGCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGC-CCACTGGACA 32439 Query 12627 GCCCTGCACTGACCGGAACGCCAACGACGCCAACTGCGCGACAGGGAACGAATAATACTC 12686 | || |||||||||||||||||||| | ||||| |||| |||||| || ||||| | Sbjct 32440 GTCCGGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAATACCC 32499 Query 12687 AGATCGCAAACACGGCTTTCGTTATGGCCGCGATTGCCGCCCTTGTAGACTCGTCGCCTG 12746 |||| || ||||| ||||| || ||||||||||||| | || | ||| |||| |||| Sbjct 32500 AGATTGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTCACCTG 32559 Query 12747 ACGCACTGAATACGCTGAACGAGCTGGCGGCGGCGCTGGGCAATGACCCGAATTTTGCTA 12806 ||||||||||||||||||| || ||||| || ||||| || ||||| || ||||||||| Sbjct 32560 ACGCACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTTTGCTA 32619 Query 12807 CCACCATGACTAATGCGCTTGCGAGTAAGCAACCGAAAGATGCCACTTTGACGGCGCTGG 12866 ||||||||||||| ||||||||| |||| |||||||| |||| || |||||||||||| Sbjct 32620 CCACCATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGCGCTGG 32679 Query 12867 CGGGGCTTGCTACTGCGGCAGACAGGTTTCCGTATTTTACGGGGAATGATGTTGCCAGCC 12926 | |||||| | || ||| | | | || ||||||||| ||| ||||||| ||||||| Sbjct 32680 CAGGGCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGCCAGCC 32739 Query 12927 TGGCGACCCTGACAAAAGTCGGGCGGGATATTCTGGCTAAATCGACCGTTGCCGCCGTTA 12986 || | ||||| | || || ||||||||||||| ||| ||||||| | ||| Sbjct 32740 TGACTGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGATGTTC 32799 Query 12987 TCGAATATCTCGG 12999 | ||||| || || Sbjct 32800 TTGAATACCTTGG 32812 Score = 408 bits (452), Expect = 9e-110 Identities = 387/493 (78%), Gaps = 1/493 (0%) Strand=Plus/Plus Query 12507 CGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCGACTAACAGCACGTCTGAAACGCTCGCCG 12566 || |||| || | || |||||||| || || || |||||||||||||||||||| || | Sbjct 36455 CGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCTTGCTG 36514 Query 12567 CAACACCAAAAGCCGTTAAGACGGTAATGGATGAAACGAACAAGAAAGCGCCATTAAACA 12626 |||| ||||| || |||||| |||||||||||||||||||| ||||| ||| | ||| Sbjct 36515 CAACGCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGC-CCACTGGACA 36573 Query 12627 GCCCTGCACTGACCGGAACGCCAACGACGCCAACTGCGCGACAGGGAACGAATAATACTC 12686 | || |||||||||||||||||||| | ||||| |||| |||||| || ||||| | Sbjct 36574 GTCCGGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAATACCC 36633 Query 12687 AGATCGCAAACACGGCTTTCGTTATGGCCGCGATTGCCGCCCTTGTAGACTCGTCGCCTG 12746 |||| || ||||| ||||| || ||||||||||||| | || | ||| |||| |||| Sbjct 36634 AGATTGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTCACCTG 36693 Query 12747 ACGCACTGAATACGCTGAACGAGCTGGCGGCGGCGCTGGGCAATGACCCGAATTTTGCTA 12806 ||||||||||||||||||| || ||||| || ||||| || ||||| || ||||||||| Sbjct 36694 ACGCACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTTTGCTA 36753 Query 12807 CCACCATGACTAATGCGCTTGCGAGTAAGCAACCGAAAGATGCCACTTTGACGGCGCTGG 12866 ||||||||||||| ||||||||| |||| |||||||| |||| || |||||||||||| Sbjct 36754 CCACCATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGCGCTGG 36813 Query 12867 CGGGGCTTGCTACTGCGGCAGACAGGTTTCCGTATTTTACGGGGAATGATGTTGCCAGCC 12926 | |||||| | || ||| | | | || ||||||||| ||| ||||||| ||||||| Sbjct 36814 CAGGGCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGCCAGCC 36873 Query 12927 TGGCGACCCTGACAAAAGTCGGGCGGGATATTCTGGCTAAATCGACCGTTGCCGCCGTTA 12986 || | ||||| | || || ||||||||||||| ||| ||||||| | ||| Sbjct 36874 TGACTGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGATGTTC 36933 Query 12987 TCGAATATCTCGG 12999 | ||||| || || Sbjct 36934 TTGAATACCTTGG 36946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104466291918864