Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq19 125 8e-24 seq3 114 1e-20 seq2 104 3e-17 seq494 98.7 1e-15 seq4 93.3 5e-14 >seq19 Length=1029424 Score = 125 bits (138), Expect = 8e-24 Identities = 193/272 (71%), Gaps = 10/272 (4%) Strand=Plus/Plus Query 6907 GTATATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAA 6966 ||| |||||||| ||| ||| | | ||||| ||||| || || ||| | ||| Sbjct 887870 GTAGATCTTGCCGGAAAAGTTCACGCTCGCGCCGTGGGTGAGGTGACCTCCGTGGGCCAG 887929 Query 6967 GGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGC 7026 | |||| ||||||||| |||||| ||||| || || || | | || || ||| || Sbjct 887930 GCTCATACCGAGAACCGTATCACCGGGCTTGAGCAGGGCCATGAAGACAGCAGAGTTGGC 887989 Query 7027 TTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCA--ACTAAACAGTTCTTTAGCA 7084 || ||||||||||| || || ||||| ||| | ||| | |||||| || || || Sbjct 887990 CTGGGAACCGGAATGCGGCTGCACGTTGGCGTA--GGCAGCGCCAAACAGCTCCTTTGCG 888047 Query 7085 CGCTCAATTGCCAGGTTCTCG---ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGT 7141 |||||||| ||||| | ||| || || || || |||||||||| ||||| || Sbjct 888048 CGCTCAATCGCCAGATCTTCGGCAATATCCACGAATT---CGCAGCCGCCGTAATAGCGC 888104 Query 7142 TTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 ||||||||||| || || || |||||||| || Sbjct 888105 TTGCCCGGATAGCCTTCCGCGTACTTGTTAGT 888136 >seq3 Length=4400433 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 || || || || || ||||| ||| | | ||| | || | || ||| || |||| | Sbjct 92825 CCATGCGTCAGGTGACCGCCAGCGTCGAGGCTCATGCCAAGGATCGTATCTCCAGGCTGC 92884 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || |||||| | || ||||| || |||||||| || |||| || || || || || Sbjct 92885 AGCAGCGCTTGGAACACGGCCTGATTGGCTTGTGAGCCAGAATTCGGCTGGACATTCGCA 92944 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 || ||| ||||| |||||| || || ||| || | ||| |||| | | ||| | Sbjct 92945 AACCCGCACTCAAACAATTCTTTGGCCCGGTCACGCGCGATGTTTTCGACTACGTCGACA 93004 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 | | |||||||||||||||| || || ||||| || || |||||||||||||| Sbjct 93005 TATTCGCAGCCGCCATAATAACGCCGCCCTGGATAGCCTTCCGCATACTTGTTGGT 93060 >seq2 Length=6328565 Score = 104 bits (114), Expect = 3e-17 Identities = 171/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || ||||||| ||| | || | | || |||||||| || |||||| | || Sbjct 2248484 TCGCCCGGCTGCAGCAAAGCCAGAAAGACGGCCTGGTTCATCTGGCTACCGGAGTTCGGC 2248425 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105 || || || || || | || || ||||| || || || || || ||||| | ||| Sbjct 2248424 TGCACATTGGCAAATCCGGCACCGAAGAGTTCCTTTGCGCGTTCGATCGCCAGCGTTTCG 2248365 Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165 | ||||| | |||| ||||| ||||| || ||||||||||| || |||||||| Sbjct 2248364 GCGACGTCGGCGAATTCGCAACCGCCGTAATAACGCTTGCCCGGATAGCCTTCAGCATAT 2248305 Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGAC 7225 |||||||| || || |||||||| |||| || ||| | || || |||||| ||| Sbjct 2248304 TTGTTGGTGAAGATCGAACCCTGCGCTTCCAGAACCGCTCGGGAAACGATGTTTTCAGAC 2248245 Query 7226 GCAATCA 7232 ||||||| Sbjct 2248244 GCAATCA 2248238 >seq494 Length=51301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || || |||| ||| || || || | || |||||||| || ||||| || | || Sbjct 6190 TCGCCGGGCTGCAGCAGGGCCAGGAACACGGCCTGGTTCATCTGGGAACCCGAGTTGGGC 6249 Query 7046 TGAACGTTTGCGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104 || ||||| ||||| ||| | || ||||| || || || || || |||||| |||| Sbjct 6250 TGCACGTTGGCGAAGGATGCTCCGAAG-AGTTCCTTGGCGCGTTCGATGGCCAGGGTCTC 6308 Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164 | | ||| | | | ||||||||| || || |||||||||||||| || || || || Sbjct 6309 GGCCACGTCGACGTATTGGCAGCCGCCGTAGTAGCGTTTGCCCGGATAGCCTTCGGCGTA 6368 Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGA 7224 |||||||| | | || |||||||||| | || || | || || |||||| || Sbjct 6369 TTTGTTGGTCATGACCGAGCCCTGTGCTTCGAGCACGGCGGCGGATACGATGTTTTCCGA 6428 Query 7225 CGCAATCA 7232 || |||| Sbjct 6429 GGCGATCA 6436 >seq4 Length=3599618 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 6925 ATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGA 6984 |||||| ||||||||||| || || || |||||| | | | | ||| | || || | Sbjct 384256 ATTCGCCTTGTGCCCGTGGGTAAGGTGACCGCCGTGGGCGAGGTCCATGGTGAAAATCTT 384315 Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 || || ||||| || | | ||||| || || || || || |||||||| || Sbjct 384316 GTCGCCGGGCTTGAGCACGGAGAAATAAACAGCGGTATTCGCCTGGGAGCCGGAATGCGG 384375 Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104 || ||||| ||| || | || || || || || ||||| || || || || || Sbjct 384376 CTGCACGTTCGCGTGATCCGCCCCGAAGAGCTCCTTGGCGCGCTCGATGGCAAGTTTTTC 384435 Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164 | |||| | | | ||||||| || || | |||||||| ||||| || || || || Sbjct 384436 AACGACATCCACGTATTCGCAGCCACCGTACCAGCGTTTGCCGGGATAGCCTTCGGCGTA 384495 Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 |||||||| | | ||||||||||| | ||| || Sbjct 384496 TTTGTTGGTGAGCAGGGAACCCTGTGCCTCCATGAC 384531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555358118426720