Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=7344524 Score = 154 bits (170), Expect = 1e-32 Identities = 409/619 (66%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 12985 GTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTAC 13044 ||| || |||||||| |||||||| ||| | || ||||| || || | | ||| Sbjct 2684234 GTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATACCAATCAGTCCTAC 2684175 Query 13045 AGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCT 13104 || | || || |||| ||| | ||||| || || || || | | || || |||| Sbjct 2684174 GGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTGGCAATAATACCTCT 2684115 Query 13105 TATTACGTTCTCTAATGGAGGATT-----TGATA-GATGCTTAAACATCATACATGCAAA 13158 | ||| ||| ||| | || |||| ||| || ||| || ||| ||||| Sbjct 2684114 CAC--CGTA-TCTTTTGGTAGCTTGTGGATGATGTGATCATTGTACAGCAAACAGGCAAA 2684058 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||||||||| || ||||| | || || | ||| || || || | ||||||||||| Sbjct 2684057 GTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTCAGACCCGGCAT 2683998 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | || || || || | ||| || || | | |||||||| ||||| || || || || Sbjct 2683997 CAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAGAAGATACCCTC 2683938 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||||||||||| || || | | ||| | | | || || |||| ||||| Sbjct 2683937 CACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCAT------TCTCAATCCAACG 2683884 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 |||||| | ||||||| || ||||||| || | || || ||||| || | || Sbjct 2683883 CAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTTGAACAGGTA 2683824 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 | ||||||||| ||||| |||||| || || || | | | || | || || || Sbjct 2683823 GTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGTCTCCGAGTG 2683764 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG-ATACCTGAACTT 13517 ||||| |||||| || || || || || || || | ||||| | ||| ||| || | Sbjct 2683763 GATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATA-CTGTACCT 2683705 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 ||| ||| | || || | ||| ||||| || ||||||||| || |||||||| | Sbjct 2683704 CGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCGCAAAAAAGG 2683645 Query 13578 CAAGTATGTGCTTAATAAA 13596 | |||| || || || || Sbjct 2683644 CCAGTACATGTTTTATGAA 2683626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978555098264