Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq5 113 2e-20 seq571 109 2e-19 >seq5 Length=3486096 Score = 113 bits (124), Expect = 2e-20 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 10206 CCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAGGACAAG 10265 || ||||| ||||||| | || || || | || || |||| || || |||||| Sbjct 756313 CCCAGCGGAAGCGCGGTTACTAATCTCAGTATTGCTACCTCCGAAACATGGAAAGACAAG 756372 Query 10266 GCGAGCGGCGA-CATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGTCGGCT 10324 || |||| | || || |||| |||||||||||||| || ||||||| ||| || Sbjct 756373 CAGACCGGCCAGCAGCA-GGAGCGTACTGAATGGCACCGTGTTGTGTTCTTCAATCGTCT 756431 Query 10325 GGCTGAGATCGTCGACGAGCACCTG-CGCAAGGGCGCATCTGTCTACATCGAGGG-GCGC 10382 ||||||||||| || ||| ||||| |||| ||| ||||| || ||||| ||| Sbjct 756432 GGCTGAGATCGCCGGCGAATACCTGAAAAAAGGTAGCA-AGGTCTATATAGAGGGTGCG- 756489 Query 10383 ATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGAGATCGTC 10442 | | ||||| || ||||| | ||| ||||||||||||||||| || ||||| || Sbjct 756490 TTGAGAACGCGCAAATGGCAAGGTCAGGATGGCCAGGATCGTTACACCACAGAGATTGTT 756549 Query 10443 GCTGACCGCATGCAGATGCTCG 10464 || || ||||||||||||| Sbjct 756550 GCCAACGAAATGCAGATGCTCG 756571 >seq571 Length=34005 Score = 109 bits (120), Expect = 2e-19 Identities = 264/392 (67%), Gaps = 12/392 (3%) Strand=Plus/Plus Query 56527 ATGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACAGCGAGG-AGCATCTGGACGCGCC 56585 |||| ||||||||||| | ||| |||||| | ||| | ||||| |||| ||| Sbjct 26376 ATGGGGACCGGCGTCAATGCGCAATTGCGCCTGAAG-GCGCTCCACCATCTCGACGTGCC 26434 Query 56586 GTGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAACCAGAA 56645 ||| |||| | |||| ||||||||||| |||||| || |||||||||||| | Sbjct 26435 ATGGCTCCCCTCCCAGATCGAACAGCGCGAGGGCCGCATCGAGCGGCAGGGCAACCAGCA 26494 Query 56646 CAAGCAGGTGCGCATCCGCGCGTGGGCGAC-GAAGGGCAGCTACGACTCGACCATGTGGG 56704 | || | ||| ||| | ||||| ||||| | | || || |||||| Sbjct 26495 TGACGAGATCGATATCTTCGCCTATGCGACCGAAGGTTCGATG-GATGCGCAGATGTGGC 26553 Query 56705 GGATGAACGCCCGCAAGGCTCGCTTCATCGAACAGGCCCTCAACGGCGACGACAGC-GTG 56763 || |||| |||||||| |||||||| | ||||| ||||||| ||| | ||| Sbjct 26554 AGAACAACGAGCGCAAGGCCCGCTTCATTGCCGCTGCCCTTTCCGGCGAC-ACATCCGTG 26612 Query 56764 CGCTCGCTGGAGGACGTGTCCGAGGCGTCGGC------GTTCGACATGGCCGCCGCGCTG 56817 ||| ||| || || || ||||| ||| ||||| |||||| || | Sbjct 26613 CGCCGGCTCGAAGATTTGGGCGAGGGCCAGGCCAATCAGTTCGCCATGGCGAAAGCCATC 26672 Query 56818 GCGTCGGGCGACGAGCGCTACATGAAGCTGGCCGGCCTGAAGGCCGACGTCGAGCGGCTG 56877 ||||||||||| ||||| ||| || ||| || ||| | |||||||||| ||||| Sbjct 26673 GCGTCGGGCGATCAGCGCCTGATGCAGAAGGCGGGACTGGAAGCCGACGTCGCCCGGCTT 26732 Query 56878 GAGCGCCTGAGCTACGCGCACCACGACGACCA 56909 || |||||| || |||||| | ||| || || Sbjct 26733 GAACGCCTGCGCGCCGCGCATCGCGATGATCA 26764 Score = 96.9 bits (106), Expect = 1e-15 Identities = 248/359 (69%), Gaps = 23/359 (6%) Strand=Plus/Plus Query 54297 CGATGCGATGTTCGT-GTCGCTCAAC-AACAAGGGCGTGCTCGACCTCGACGACGTGGC- 54353 ||||||| | ||| ||| |||||| ||| || || | |||| |||||| | ||||| Sbjct 23660 CGATGCGCTCGCCGTCGTC-CTCAACGAACGCGGCCGCG-TCGATCTCGACCATGTGGCC 23717 Query 54354 GCGCCTCTCGAACATGAG--CCGCCAGGAC-GTCATCGACGCGCTCGGCACCTCGATCTA 54410 | || ||| ||||||| |||| | || || ||||| | || |||| | ||||||| Sbjct 23718 GAGCTTCT---ACATGAGGACCGC-ACCACTGTGATCGAGGAACTTGGCAGCGCGATCTA 23773 Query 54411 CGAGGACCCGGCGAAGGGCT---GGCAGACGTCCGACGCGTACCTGTCGGGCAACGTCGT 54467 | || ||||| | |||| ||||||| |||||||| || || ||||| || | Sbjct 23774 CCGCGATCCGGCCGATGGCTCGTGGCAGACCTCCGACGCCTATCTTTCGGGTCCGGT-GC 23832 Query 54468 GCG-CAAGCTCGCGGAGGCGCAGGCCGCCGCGCGCGC-CGACCGGAAGTATCAGCGCAAC 54525 ||| | |||| ||| || ||| ||| |||| || | ||| | | || | ||||| Sbjct 23833 GCGACCAGCTGGCGATGGTGCAAGCCACCGC-CGAACTCGATCCGGCTTACAAACGCAAT 23891 Query 54526 GTCGAGGCGCTGCTCGCGGTGCAGCCGAAGCCG--CTGGGCCCGACCGACATCACGGTGA 54583 ||||||||||| || ||||||||| |||| || ||||| | |||||||||| Sbjct 23892 GTCGAGGCGCTCGAGGCTGTGCAGCCG--GCCGATCTCAGCCCGTCGGACATCACGGCTC 23949 Query 54584 AGCTGGGCCAGAATTGGATTCCGGCCAGCGACGTCGCCGCGTTCGCGAGCGAGGCGCTG 54642 ||| ||| ||||| || |||||||| || | || |||| || ||| || || Sbjct 23950 GGCTCGGCGCACCCTGGATCCCCGCCAGCGATGTGGTCGATTTCGTGAAGGAGACGATG 24008 Score = 96.9 bits (106), Expect = 1e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 55537 GAGCTGGGCGTCGACCGTCTGTTCGTCGACGAATTCCACGAGTTCCGCAAACTCGACTTC 55596 ||| | || ||||||| | |||||||||| || |||||||| |||||| ||| Sbjct 25199 GAGATTGGTGTCGACCAGATCATCGTCGACGAGGCGCAGGAGTTCCGGAAACTCTCCTTT 25258 Query 55597 GCGACGCAGCAGAGCAACA-TCAAGGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGA 55655 ||||| || || | || | |||||| |||| ||| |||||| |||||||| ||| Sbjct 25259 GCGAC-CAACATGTCGACCCTGAAGGGCGTCGATCCGAACGGCTCACAGCGCGCCTGGGA 25317 Query 55656 CCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAGCCGGGCCGCGCGCTCGTGGCCGC 55715 || | | || || | | | | |||||| || ||||||||||| ||| || Sbjct 25318 TCTCTATGTCAAATCCCGCTTCATCGAAACCAAGAACCCCGGCCGCGCGCTGGTGCTGGC 25377 Query 55716 GTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGCGCAACGCTTC 55770 ||||||||||||| |||| |||||| | || || | | | ||| ||| || ||| Sbjct 25378 GTCCGGCACGCCGATCACCAACACGCTTGGAGAAATGTTCTCCGTGCAGCGGTTC 25432 Score = 82.4 bits (90), Expect = 3e-11 Identities = 182/270 (67%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 55072 CTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACGGGCATGGAGGAG 55131 ||||| ||||| ||||| || |||||||| | |||||| || || |||||| || Sbjct 24740 CTCGCCCACGCAGTCGGTGCCGGCAAGACCATGACGATGGCGGCCGCGATCATGGAACAG 24799 Query 55132 CGCCGGCTGGGCCT---CTCCAACAAGCCGATGTACGTGGTGCCGAACCACATGCTCGCG 55188 || || || || || ||| || |||| ||| || ||||| || || ||| Sbjct 24800 CGTCGCCTCGGACTGATCTCGAA--AGCC-ATGCTGGTTGTGCCCGGTCATTGCCTGGCG 24856 Query 55189 CAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATCATGGTCGCGGACGAG 55248 || ||| ||||||||||| | |||||| ||| |||| ||| | || || |||||| Sbjct 24857 CAAGCCGCTCGCGAATTCCTGGCGCTCTATCCGACCGCCCGTATCCTCGTTGCCGACGAG 24916 Query 55249 CAGAATTTCCACACGCACAACCGCCGTCGCTTCGTCGCGCAGGCCGCGCTCAACAATCCG 55308 |||||| || ||| || | |||||| | ||| || ||| || | Sbjct 24917 ACGAATTTTTCCAAAGTCAAGCGACATCGCTTTCTGTCGCGTGCGGCGACTGCCACCTGG 24976 Query 55309 GATGCGGTCATCATCACGCACTCGGCGTTC 55338 |||||| |||||||||| || ||||| ||| Sbjct 24977 GATGCGATCATCATCACCCATTCGGCCTTC 25006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204295777410036