Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 >seq1 Length=7344524 Score = 105 bits (116), Expect = 2e-17 Identities = 406/625 (65%), Gaps = 22/625 (4%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 || ||| | || ||| | ||||| || ||||||| | || || || ||||||| ||| Sbjct 2683455 GAGCCGATCTTGGTAGACAACCCGAATCGATTTGTTCTCTTCCCCATCCAGCATGATGAC 2683514 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| || || || | | || | ||| ||||||| || || | || ||| Sbjct 2683515 ATCTGGGCCGAATATAAGAAGTCGGAAGCCTGTTTCTGGACTGCGGAGGAGATTGACCTG 2683574 Query 268793 TCTTATGACTTAATAGATTGGAA----AAATTTAAAACCA-GAAGAAAGAAGATTTATAT 268847 | ||| | | |||||||| ||| | |||| | || || | || ||| Sbjct 2683575 AGCCAAGACCTGACCGATTGGAATAGCAAACT--AAACGACGATGAGCGTCACTTCATAA 2683632 Query 268848 CTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGA 268907 || | || || |||||||| | ||| || ||||| ||||| || || | |||| Sbjct 2683633 AACATGTACTGGCCTTTTTTGCGGCCTCTGACGGGATCGTAAACGAGAACCTGGCGGAGA 2683692 Query 268908 AGTTCTGTCAA-GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 | || ||| ||||||||| | | || |||| || || ||||| || ||||| Sbjct 2683693 ACTT-TGTAGCCGAGGTACAGTATACGGAGGCCAAATTCTTCTACGGCTTTCAGATCATG 2683751 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC 269026 || || ||||| || || |||| ||| || | || || || ||||| | || | Sbjct 2683752 ATGGAGAATATCCACTCGGAGACTTACTCCCTGCTCATCGACACCTATATTAAAGACACA 2683811 Query 269027 AACGAAAAGAAAAGACTA--TTTTCTTCT--AT-GAGAACTATGGACTGTGTGAGaaaaa 269081 || ||||| |||||| | ||| | || |||| | ||||||| || | |||| Sbjct 2683812 AAGGAAAA----AGACTACCTGTTCAACGCCATCGAGACCC-TGGACTGCGTAAAGAAAA 2683866 Query 269082 aaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTG 269141 || | || ||||| || ||||| | || | | ||| || || | | | | Sbjct 2683867 AAGCGGAGTGGGCCTTGCGTTGGATTGAGAATGGTTC--CTT-CGCTGAGCGCCTCATCG 2683923 Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201 | ||||| || || || ||||| |||||||| || || || | ||||| ||||||| Sbjct 2683924 CCTTTGCAGCAGTGGAGGGTATCTTCTTTTCTGGTTCGTTCTGTTCGATCTTCTGGTTGA 2683983 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 |||| | || | ||||| || | | |||||||| || ||||| ||| | || || | Sbjct 2683984 AGAAGCGTGGTTTGATGCCGGGTCTGAGCTTCTCTAATGAGTTGATCAGCCGTGATGAGG 2684043 Query 269262 GTTTACACTGCGACTTCGCTTGTTT 269286 || | ||||| ||||| || ||||| Sbjct 2684044 GTATGCACTGTGACTTTGCCTGTTT 2684068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387601322256