Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq493 122 2e-23 seq19 82.4 2e-11 >seq493 Length=52014 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47064 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 47123 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 47124 TTGGTTACGTCT 47135 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49844 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 49903 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 49904 TTGGTTACGTCT 49915 Score = 116 bits (128), Expect = 9e-22 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | Sbjct 47254 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 47313 Query 18858 GCGAGGATTGTTAT 18871 |||||||||||||| Sbjct 47314 GCGAGGATTGTTAT 47327 Score = 116 bits (128), Expect = 9e-22 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | Sbjct 50034 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 50093 Query 18858 GCGAGGATTGTTAT 18871 |||||||||||||| Sbjct 50094 GCGAGGATTGTTAT 50107 >seq19 Length=1029424 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33051 CCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGC 33110 |||| |||||||| |||||||||| ||| | | ||||| || ||| ||||||| Sbjct 327896 CCGGTATCCATTCAGATTTCAGACTCCGGAACAGCCTCTCCATCGGTGCGTTGTCCCAGC 327955 Query 33111 AGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACT 33170 |||| || || |||||||| || ||| | || | || ||||| | ||| ||||||| Sbjct 327956 AGTTGCCACGTCGGCTCATGCTTTGTGTCATTCGATAGCGCCAGAGCCTCTGACGGAACT 328015 Query 33171 GCCTGCTCGTATAATGACTGCCCTG 33195 | ||| | ||| ||||| ||||| Sbjct 328016 TACGGCTGGCATACTGACTTCCCTG 328040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124814915036920