Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq493 183 8e-42 >seq493 Length=52014 Score = 183 bits (202), Expect = 8e-42 Identities = 113/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 5549 TTTTGCTGCTTCAAGCTCAAAGCGCAGCTTACCTACCGTAAGCGCAATATCCTCGTTCTC 5608 |||||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 48134 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 48193 Query 5609 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTGCCAGCAC 5668 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 48194 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Query 5669 A 5669 | Sbjct 48254 A 48254 Score = 183 bits (202), Expect = 8e-42 Identities = 113/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 5549 TTTTGCTGCTTCAAGCTCAAAGCGCAGCTTACCTACCGTAAGCGCAATATCCTCGTTCTC 5608 |||||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 50914 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 50973 Query 5609 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTGCCAGCAC 5668 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 50974 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Query 5669 A 5669 | Sbjct 51034 A 51034 Score = 111 bits (122), Expect = 4e-20 Identities = 66/69 (96%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| Sbjct 47259 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAG 47318 Query 4701 GATTGTTAT 4709 ||||||||| Sbjct 47319 GATTGTTAT 47327 Score = 111 bits (122), Expect = 4e-20 Identities = 66/69 (96%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| Sbjct 50039 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAG 50098 Query 4701 GATTGTTAT 4709 ||||||||| Sbjct 50099 GATTGTTAT 50107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132328449724952