Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq19 167 1e-36 seq493 118 6e-22 >seq19 Length=1029424 Score = 167 bits (184), Expect = 1e-36 Identities = 473/715 (66%), Gaps = 14/715 (2%) Strand=Plus/Minus Query 71904 CAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCG 71963 ||||| || || | |||||||| || | ||||| || ||||| ||||| || || || Sbjct 739870 CAGCCTTCGGACTTGATCATTGTGGCAGGGCGCCCCTCCATGGGTAAGACGACCTTCGCC 739811 Query 71964 ATGAATCTCGTCGAAAATGCCGCAGTTC-GTAACGATAAGCCCGTATTGGTTTTTAGCCT 72022 |||||| | || || || ||| | | || | | || | ||| || |||| || || | Sbjct 739810 ATGAATATTGTAGAGAACGCC-CTGATCAGCACCGGCACGCCGGTTCTGGTATTCAGTAT 739752 Query 72023 TGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCA 72082 || |||||| | || ||||| || | || || | ||| ||||||| Sbjct 739751 GGAAATGCCGGCGGATGCCCTCGCCATGCGTATGCTCTCGTCGCTCGGGCGCATTGATCA 739692 Query 72083 GACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAAT 72142 ||| | || || | || | || || || ||| | ||| | | ||| | Sbjct 739691 GACCAAGGTCCGTGGCGGTAAGCTGGAAGAGGACGACTGGCCCCGGCTGACGTCCGCGGT 739632 Query 72143 GGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGACGCCGAC 72202 | | ||||| |||||||| | ||| ||||| || || | ||||| || || Sbjct 739631 GAGCCTTCTGAAGGACAAGCCGC---TTTACATTGACGATACACCGGGCCTGAGCCCCAC 739575 Query 72203 AGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGA---GCATGAT 72259 || | || ||||| ||||| ||| || || |||| ||| || || |||| Sbjct 739574 GGAAATGCGCTCCCGGGCTCGACGTATTGCCCGGGAGAATGACGGTAAGATAGGCCTGAT 739515 Query 72260 TATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-GATAACCGAACGCTGG 72318 ||| ||||||||||||| || ||||| || |||| || || || ||| ||| | Sbjct 739514 CATGGTCGACTACCTGCAGCTGATGCGGGTACCCG-GCAACACCGAAGGCCGGACGGCCG 739456 Query 72319 AAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACC-GGTG 72377 | ||| | || || || || || ||||||| | || || ||| | || | || |||| Sbjct 739455 AGATTTCGGAAATCTCGCGGTCCCTGAAGGGTATTGCCAAAGAACT-CAGCTGCCCGGTG 739397 Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAAT 72437 ||||| |||| || || || || ||||| ||||| | |||| || ||||| || Sbjct 739396 GTGGCGCTGTCCCAGCTCAACCGGAGTCTTGAGCAGCGGCCCAACAAGCGCCCGGTTAAC 739337 Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497 || ||| |||| ||||| || || || ||||||||||| ||| | || |||||| |||| Sbjct 739336 TCCGATCTACGGGAATCGGGCGCCATCGAGCAGGACGCCGACGTCATCATGTTTGTGTAC 739277 Query 72498 CGCGACGAAGTTTATCACCCGGATA-GCGAAATGAAGGGCATTGCCGAGGTAATTATCGG 72556 || || || || ||| || || | || | ||||||||||||||| | || || || Sbjct 739276 CGGGATGAGGTCTATAACGAAGACACGCCGGA-CAAGGGCATTGCCGAGATCATCATTGG 739218 Query 72557 AAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATAC 72611 ||||| || || ||||| || ||||| | | |||| |||| |||| | ||| Sbjct 739217 CAAGCAGCGGAACGGCCCCATCGGCACTATCCGCCTGGCCTTTATCGGCAAGTAC 739163 >seq493 Length=52014 Score = 118 bits (130), Expect = 6e-22 Identities = 230/335 (69%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 36478 CCAAGGTATTGGATAACAGCAAGAATGCTTGTTTTGGCCAGAATATCGCGACCAAC-TGA 36536 |||||||||| | |||| | || | |||| ||||||||||| | ||||| ||| Sbjct 32812 CCAAGGTATTCAAGAACATCTGCAACGGAATTTTTTGCCAGAATATCCCTGCCAACCTGA 32753 Query 36537 C---GTTAAGTCAGTCTGAGAAACAGTGTCTGTACCGGTAAAGTACGGCAATTTATTTG- 36592 ||| |||||| ||| | | || | | | ||| ||||| ||||||||| Sbjct 32752 GTCAGTTCAGTCAGGCTGG----CGGCATCATTTTCCGCAAAATACGGTAATTTATTTTT 32697 Query 36593 CGCCTGTCGCAAGACCAGCAAGCGCGGTTAAAGTTGCATCAAGTGGCTGTTTCCCTGCCA 36652 |||| || | ||| || || ||||| || | || |||| || ||||| || || | Sbjct 32696 CGCC-GTGGAAAGCCCTGCCAGCGCCGTCAGTGTCGCATTCTTCGGTTGTTTACCCGCAA 32638 Query 36653 GCGCATTTGTCATTGTTGTCGCAAAGTTCGGGTCATTGCCCAGTGCTGCTGCAAGCTCAT 36712 |||| || ||||| || || ||||| | || ||||| || || ||||| || || |||| Sbjct 32637 GCGCGTTAGTCATGGTGGTAGCAAAATCTGGATCATTCCCGAGCGCTGCGGCCAGTTCAT 32578 Query 36713 ACAGGGTATCAAGAGCTTCAGGTGATGAGCCGACCAATGCAGAGATAGCAGCCCGTACGT 36772 ||| |||| || || |||||||| | | ||| | | | || || ||| |||| Sbjct 32577 TCAGCGTATTCAGTGCGTCAGGTGACGCGTCGATAACATCTGCAATCGCGGCCAGTACAA 32518 Query 36773 AAGCAGTCGTAGCGATCTGCGTATTGTTTGTGCCC 36807 |||| || | || ||||| ||||||||||| ||| Sbjct 32517 AAGCGGTGTTCGCAATCTGGGTATTGTTTGTTCCC 32483 Score = 118 bits (130), Expect = 6e-22 Identities = 230/335 (69%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 36478 CCAAGGTATTGGATAACAGCAAGAATGCTTGTTTTGGCCAGAATATCGCGACCAAC-TGA 36536 |||||||||| | |||| | || | |||| ||||||||||| | ||||| ||| Sbjct 36946 CCAAGGTATTCAAGAACATCTGCAACGGAATTTTTTGCCAGAATATCCCTGCCAACCTGA 36887 Query 36537 C---GTTAAGTCAGTCTGAGAAACAGTGTCTGTACCGGTAAAGTACGGCAATTTATTTG- 36592 ||| |||||| ||| | | || | | | ||| ||||| ||||||||| Sbjct 36886 GTCAGTTCAGTCAGGCTGG----CGGCATCATTTTCCGCAAAATACGGTAATTTATTTTT 36831 Query 36593 CGCCTGTCGCAAGACCAGCAAGCGCGGTTAAAGTTGCATCAAGTGGCTGTTTCCCTGCCA 36652 |||| || | ||| || || ||||| || | || |||| || ||||| || || | Sbjct 36830 CGCC-GTGGAAAGCCCTGCCAGCGCCGTCAGTGTCGCATTCTTCGGTTGTTTACCCGCAA 36772 Query 36653 GCGCATTTGTCATTGTTGTCGCAAAGTTCGGGTCATTGCCCAGTGCTGCTGCAAGCTCAT 36712 |||| || ||||| || || ||||| | || ||||| || || ||||| || || |||| Sbjct 36771 GCGCGTTAGTCATGGTGGTAGCAAAATCTGGATCATTCCCGAGCGCTGCGGCCAGTTCAT 36712 Query 36713 ACAGGGTATCAAGAGCTTCAGGTGATGAGCCGACCAATGCAGAGATAGCAGCCCGTACGT 36772 ||| |||| || || |||||||| | | ||| | | | || || ||| |||| Sbjct 36711 TCAGCGTATTCAGTGCGTCAGGTGACGCGTCGATAACATCTGCAATCGCGGCCAGTACAA 36652 Query 36773 AAGCAGTCGTAGCGATCTGCGTATTGTTTGTGCCC 36807 |||| || | || ||||| ||||||||||| ||| Sbjct 36651 AAGCGGTGTTCGCAATCTGGGTATTGTTTGTTCCC 36617 Score = 109 bits (120), Expect = 3e-19 Identities = 205/295 (69%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 36915 GATCGCAGCCGCTATTTCTTTCAGCGTATCCAGTGTGCCAGGCGCACCGTTGATAAGTGC 36974 || ||| || || | ||| |||||||||| ||||| | |||| | ||| ||||| | Sbjct 32597 GAGCGCTGCGGCCAGTTCATTCAGCGTATTCAGTGCGTCAGGTGACGCGTCGATAACATC 32538 Query 36975 AGTTATAGCTGCCTTAACAAAGGCTGTATTTGCGATCTGCGTGCTGTTTGTACCT-TGCG 37033 | || || ||| ||||| || || || || ||||| || ||||||| || || | Sbjct 32537 TGCAATCGCGGCCAGTACAAAAGCGGTGTTCGCAATCTGGGTATTGTTTGTTCCCCTGAG 32478 Query 37034 CTGCCGTCGGCGCGGTTGGCGTTCCTGTCAGACTCGGGCTTTCTATTGGCGCTTTGGTAT 37093 | || || || || ||||||||||| ||||| ||| || || | ||| ||||| | | Sbjct 32477 C-GCGGTTGGTGCTGTTGGCGTTCCGGTCAGTGCCGGACTGTCCAGTGG-GCTTTTCTGT 32420 Query 37094 CAGCCAGATCTTTTATAGACTTAACAGCTTTAGGGGTAGCCGCCATTGTTTC-GCTGTCG 37152 | ||| ||| |||||| || || || || || || | ||||| | || | Sbjct 32419 TCGTTTCATCCATTACCACCTTAACCGCCTTTGGCGTTGCAGCAAGCGTTTCAGACGT-G 32361 Query 37153 CTGTTAGTTGCGCTACTGAGCTGAACTAATCCCTTTTGCGTTGTGCTTGCATCCT 37207 ||||| ||||| || |||||||| |||| |||||| ||||||| ||||||| Sbjct 32360 CTGTTGGTTGCACTGCTGAGCTGCACTATCCCCTTTCTCGTTGTGTCCGCATCCT 32306 Score = 109 bits (120), Expect = 3e-19 Identities = 205/295 (69%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 36915 GATCGCAGCCGCTATTTCTTTCAGCGTATCCAGTGTGCCAGGCGCACCGTTGATAAGTGC 36974 || ||| || || | ||| |||||||||| ||||| | |||| | ||| ||||| | Sbjct 36731 GAGCGCTGCGGCCAGTTCATTCAGCGTATTCAGTGCGTCAGGTGACGCGTCGATAACATC 36672 Query 36975 AGTTATAGCTGCCTTAACAAAGGCTGTATTTGCGATCTGCGTGCTGTTTGTACCT-TGCG 37033 | || || ||| ||||| || || || || ||||| || ||||||| || || | Sbjct 36671 TGCAATCGCGGCCAGTACAAAAGCGGTGTTCGCAATCTGGGTATTGTTTGTTCCCCTGAG 36612 Query 37034 CTGCCGTCGGCGCGGTTGGCGTTCCTGTCAGACTCGGGCTTTCTATTGGCGCTTTGGTAT 37093 | || || || || ||||||||||| ||||| ||| || || | ||| ||||| | | Sbjct 36611 C-GCGGTTGGTGCTGTTGGCGTTCCGGTCAGTGCCGGACTGTCCAGTGG-GCTTTTCTGT 36554 Query 37094 CAGCCAGATCTTTTATAGACTTAACAGCTTTAGGGGTAGCCGCCATTGTTTC-GCTGTCG 37152 | ||| ||| |||||| || || || || || || | ||||| | || | Sbjct 36553 TCGTTTCATCCATTACCACCTTAACCGCCTTTGGCGTTGCAGCAAGCGTTTCAGACGT-G 36495 Query 37153 CTGTTAGTTGCGCTACTGAGCTGAACTAATCCCTTTTGCGTTGTGCTTGCATCCT 37207 ||||| ||||| || |||||||| |||| |||||| ||||||| ||||||| Sbjct 36494 CTGTTGGTTGCACTGCTGAGCTGCACTATCCCCTTTCTCGTTGTGTCCGCATCCT 36440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303232494762972