Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq63 122 8e-23 seq36 111 1e-19 seq53 102 7e-17 >seq63 Length=566113 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 || ||| | ||| | ||| || ||||| || | ||| || ||||||| ||| | || Sbjct 328835 CAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTC 328894 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||||||| ||||| | ||||| | | ||||| || || || || || || ||||| Sbjct 328895 CTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 328954 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || | ||| ||| || ||| ||||| | | | || ||||||| ||||||||| Sbjct 328955 CTGGATCTTCGGCTTCACGCCGTCGATCGTGTCGGAGGGTTCTACGTCAAGCGTGATGGT 329014 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || || || || ||||||||||||| Sbjct 329015 CTTTCCCGTGAGGGTCTTGACGAAGATCTGCATGC 329049 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | || || ||||||| ||| | ||||||||||| |||||| | |||| Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | ||||| || || || || || || ||||| | || || ||| ||| || Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | || ||||||| |||| ||| || || || ||||| || |||| Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 94998 AGATCTGC 95005 |||||||| Sbjct 329621 AGATCTGC 329628 >seq36 Length=729648 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || || || || | ||| || ||||||| |||| | ||||||||||| Sbjct 222026 GTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTG 221967 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | | |||||||| || || ||||| || ||||| | || || Sbjct 221966 CTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGGATCTT 221907 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| ||| || ||| ||||| | | | || ||||| | |||||||| || || || Sbjct 221906 CTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGT 221847 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 221846 GAGGGTCTTGACGAAGATCTGCATGC 221821 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||||||| |||| | ||||||||||| || ||| |||||| Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | ||||| || || || || || || ||||| | |||||| ||| ||| || Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGCCGT 219947 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | ||||| || | |||||||| || || || ||||| || || | Sbjct 219946 CGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGA 219887 Query 94998 AGATCTG 95004 | ||||| Sbjct 219886 AAATCTG 219880 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||||||| ||| | ||||||||||| || ||| |||||| Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | |||||||| || || || || || ||||| | || || ||| ||| || Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220909 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | || ||||| | |||||||| || || || || || || || | Sbjct 220908 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220849 Query 94998 AGATCTGCATGC 95009 |||||||||||| Sbjct 220848 AGATCTGCATGC 220837 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||||||| ||| | ||||||||||| || ||| |||||| Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | |||||||| || || || || || ||||| | || || ||| ||| || Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 221401 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | || ||||| | |||||||| || || || || || || || | Sbjct 221400 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 221341 Query 94998 AGATCTGCATGC 95009 |||||||||||| Sbjct 221340 AGATCTGCATGC 221329 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||||||| ||| | ||||||||||| || ||| | |||| Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | |||||||| || || || || || ||||| | || || ||| ||| || Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220420 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | || ||||| | |||||||| || || || || || || || | Sbjct 220419 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220360 Query 94998 AGATCTGCATGC 95009 |||||||||||| Sbjct 220359 AGATCTGCATGC 220348 >seq53 Length=625924 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || || || ||| | ||| | || || ||||| || | ||| || ||||| Sbjct 124941 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125000 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || || Sbjct 125001 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125060 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| || ||| ||||| | | | || ||| Sbjct 125061 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125120 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || || || || || || || ||||||||||||| Sbjct 125121 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGC 125169 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || || || ||| | ||| | || || ||||| || | ||| || ||||| Sbjct 125169 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125228 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || || Sbjct 125229 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125288 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| || ||| ||||| | | | || ||| Sbjct 125289 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125348 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || || || || || || || ||||||||||||| Sbjct 125349 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGC 125397 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 || ||| | ||| | || || ||||| || | ||| || ||||| | ||| | || Sbjct 124727 CAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTC 124786 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||||||| || ||| | ||||| | | ||||| || || || || || || ||||| Sbjct 124787 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 124846 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || ||| ||| || ||| ||||| | | | || ||||| | ||||||||| Sbjct 124847 CTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGT 124906 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || ||||||||||||| Sbjct 124907 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGC 124941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || || || ||| | ||| | || || ||||| || | ||| || ||||| Sbjct 125397 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125456 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || || Sbjct 125457 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125516 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| || ||| ||||| | | | || ||| Sbjct 125517 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125576 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || || || || || || || ||||| ||||||| Sbjct 125577 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATGC 125625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||||| | ||| | ||||||||||| || ||| | |||| Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | ||||| || || || || || || ||||| | || || ||| ||| || Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 126212 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | | | || ||||| | ||||||||| || || ||||| || ||||| | Sbjct 126213 CGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGA 126272 Query 94998 AGATCTGC 95005 | |||||| Sbjct 126273 AAATCTGC 126280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287098135520