Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq19 159 1e-34 seq5 149 3e-31 seq413 93.3 2e-14 >seq19 Length=1029424 Score = 159 bits (176), Expect = 1e-34 Identities = 238/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 11169 CGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCCTGGC 11228 |||||| ||||| | ||||||||| || ||||| ||||||||| ||||| ||||| | Sbjct 986602 CGAGCATCTGCATCTGGCCGTTGATATCCACCACAACCTCGGTGGTGTAGACATCCTGAC 986661 Query 11229 CGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCT 11288 | |||| | |||||| ||||| || | || |||| || |||||||||| ||||||| Sbjct 986662 CTTCCTTGTTCTGCCATTTGCGCGTCTGCAGCTTGCCCTCAATGTAGACCTTCGAGCCCT 986721 Query 11289 TTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACT 11348 | ||||| || || | || | |||||| | | ||| || | || ||||||||||| | Sbjct 986722 TGCGCAGATACTGGCCGGCCACTTCGGCGATCTTGCCGAACATGACAACCCGGTGCCATT 986781 Query 11349 CGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGAC 11408 |||| | | | || |||||||| || || |||||||| || |||||| Sbjct 986782 CGGTTTTCGGCACCAATTGCCCGGTCTGACGATCCTTGTAGCTTTCGTCTGTTGCCAGAT 986841 Query 11409 TGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGAT 11468 | ||| || || || ||| ||||| | | | || || ||||| ||||| | Sbjct 986842 TCAGGTTCACAACGGCATTACCGTTAGGGGTGTAGCGGGTATCCGGGTCCTGTCCCAGGT 986901 Query 11469 GGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCATG 11506 |||| ||| ||||| ||||| || || ||||||||| Sbjct 986902 TACCGATCAGAATTACTTTGTTTACGCCTCGTGCCATG 986939 >seq5 Length=3486096 Score = 149 bits (164), Expect = 3e-31 Identities = 215/299 (72%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 11206 CTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCC 11265 ||| ||| |||| | |||||||| ||||| || ||||| ||||| || | | || Sbjct 756543 CTCTGTGGTGTAACGATCCTGGCCATCCTGACCTTGCCATTTGCGCGTTCTCAACGCACC 756484 Query 11266 TTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCC 11325 || || ||||||| | || ||| |||||||| | ||||| || ||||| || Sbjct 756483 CTCTATATAGACCTTGCTACCTTTTTTCAGGTATTCGCCGGCGATCTCAGCCAGACGATT 756424 Query 11326 AAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTT 11385 |||| ||| || |||||||| || || |||||||||||||||||||||||||||||||| Sbjct 756423 GAAGAACACAACACGGTGCCATTCAGTACGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTT 756364 Query 11386 CCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGAT-- 11443 ||| ||||| || || | |||||| || ||||| ||||| | ||||| || Sbjct 756363 CCATGTTTCGGAGGTAGCAATACTGAGATTAGTAACCGCGCTTCCG--CTGGGTAAATAC 756306 Query 11444 CTTGCGTCTGGATC-CTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTG 11501 ||| ||||| || ||| | || || || || || || || ||||| || || |||| Sbjct 756305 TTTGTTTCTGGGTCGCTGCCGCA-ATTACCCACTAGAATGACTTTGTTTACACCTCGTG 756248 >seq413 Length=79672 Score = 93.3 bits (102), Expect = 2e-14 Identities = 204/303 (67%), Gaps = 11/303 (4%) Strand=Plus/Plus Query 11198 ACCACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGT 11257 || || || || ||| ||||| | ||||| || | || |||||||||||||||| Sbjct 31431 ACGACGACTTCTGTGGTGTAGCGATCCTGCCCTGCTTGATCCTGCCACTTGCGGGTTTCG 31490 Query 11258 AGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCC 11317 || |||||| ||||| |||| |||||||| ||||| || || |||||| | ||| Sbjct 31491 AGCTGGCCTTCAATGTAAACCTTCGAGCCCTTACGCAGATACTGTTCTGCGAAGTTCGCC 31550 Query 11318 AGCCGGC----CAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGT 11373 || ||| | || || ||| |||||||||| ||||||| ||| ||| || Sbjct 31551 -GCGGGCTCTGCGAACAGGGAGACGTTGTGCCACTCGACACGCTCCTTGCGCTCGCCAGT 31609 Query 11374 CTGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCC 11433 | ||| |||||||| ||||| || || | ||||| || || |||| || || Sbjct 31610 GTTGCGGTCCTTCCAGCTCTCGCTTGTCGCAACGCTGAGAGA---CACGACCTTCCCACC 31666 Query 11434 ---CGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTT 11490 | || || | || || || | |||||| | |||||| | || |||||||| Sbjct 31667 ATTCTGGAATGAGCGGCTCTCCGGGTCTTTGCCCAGGTTGCCGACAATAATCACCTTGTT 31726 Query 11491 CAC 11493 ||| Sbjct 31727 CAC 31729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208497339926512