Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq165 140 5e-29 seq578 138 2e-28 seq46 138 2e-28 seq98 134 2e-27 seq156 127 3e-25 seq101 123 4e-24 >seq165 Length=286177 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || ||||| ||||| ||||||||||| Sbjct 277607 TCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCATCCGCCGTCTCGCTCGTCGTGG 277666 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| ||||||| | |||| || |||| || | || | ||| |||| Sbjct 277667 AGGTGTGAAGCGTATCTCTGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTCTT 277726 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || | | ||| || |||||||| || ||||| || Sbjct 277727 CCTCGAGAACGTCATCCGCGACTCGGTGACCTACACTGAGCACGCCCGCCGGAAGACCGT 277786 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | |||| |||||||| Sbjct 277787 GACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTTTACGGTTTTGG 277846 Query 16693 AAGTTAA 16699 | | ||| Sbjct 277847 AGGCTAA 277853 >seq578 Length=33569 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || |||||||| || || || Sbjct 32463 GCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAACCTGCCAT 32405 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 32404 CCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGGCTCATCTACGAGGAGAC 32345 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| |||||||| ||| ||| |||| || | | ||| ||||| Sbjct 32344 TCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACCGA 32285 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| || ||| ||||||| | || || || | || || || || Sbjct 32284 GCACGCCCGCCGTAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 32225 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| | ||| Sbjct 32224 CCGCACCCTCTACGGTTTCGGAGGCTAA 32197 Score = 134 bits (148), Expect = 2e-27 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || ||||||||||| || || Sbjct 3085 GCCAAGCGCCACCGGAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 3143 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3144 CCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGGCTCATCTACGAGGAGAC 3203 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || | | ||| ||||| Sbjct 3204 CCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACCGA 3263 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| || ||| ||||||| | || || || | || || || || Sbjct 3264 GCACGCCCGCCGTAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 3323 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 3324 CCGCACCCTCTACGGTTTCGG 3344 >seq46 Length=666003 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || ||||||||||| ||||| Sbjct 522903 GCCAAGCGCCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 522845 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || ||||| ||||||||| ||||||| | |||| || |||| Sbjct 522844 CCGCCGCCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCTGGGCTCATCTACGAGGAGAC 522785 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| ||| |||| || | | ||| ||||| Sbjct 522784 CCGAGGCGTGCTCAAGGTTTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACCGA 522725 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| ||||| || ||| |||||||| | || || || | || || || || Sbjct 522724 GCACGCCCGACGGAAGACCGTGACCGCCATGGATGTGGTGTACGCCCTCAAGCGCCAGGG 522665 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| | ||| Sbjct 522664 CCGCACCCTCTACGGTTTCGGAGGCTAA 522637 >seq98 Length=422460 Score = 134 bits (148), Expect = 2e-27 Identities = 192/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || |||||||| || || || Sbjct 23686 GCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAACCTGCCAT 23628 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 23627 CCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGGCTCATCTACGAGGAGAC 23568 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| |||||||| ||| ||| |||| || | | ||| ||||| Sbjct 23567 TCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCAGTGACCTACACCGA 23508 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || ||| ||||||| | || || || | || || || || Sbjct 23507 GCACGCCCGCCGCAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 23448 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| | ||| Sbjct 23447 CCGCACCCTCTACGGTTTCGGAGGCTAA 23420 >seq156 Length=307624 Score = 127 bits (140), Expect = 3e-25 Identities = 191/269 (71%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 7733 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 7675 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || ||||| || ||||| ||||||| | |||| || |||| Sbjct 7674 TCCGCCGCCTCGCTCGCCGCGGTGGTGTAAAGCGAATCTCTGGGCTCATCTACGAGGAGA 7615 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||| ||| ||| ||| |||| ||| | || ||| |||| Sbjct 7614 CCCGCGGCGTGCTCAAGGTCTTTCTCGAGAACGTCATCCGTGACTCGGTCACCTACACCG 7555 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || ||| ||||||| | || || || | || || || | Sbjct 7554 AGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTAGTGTACGCCCTCAAGCGCCAGG 7495 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| ||| | ||| Sbjct 7494 GCCGCACCCTCTACGGTTTCGGAGGCTAA 7466 >seq101 Length=415395 Score = 123 bits (136), Expect = 4e-24 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || ||||| || || ||||||||||| || | Sbjct 290826 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATTCAGGGCATCACCAAGCCCGCCA 290768 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 290767 TCCGCCGCCTCGCTCGCCGCGGAGGTGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGA 290708 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| || | | ||| |||| Sbjct 290707 CCCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACCG 290648 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || ||| ||||||| | || || || | ||||| || | Sbjct 290647 AGCACGCCCGCCGCAAGACCGTGACCGCCATGGACGTTGTGTACGCCCTCAAACGCCAGG 290588 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| ||||| || Sbjct 290587 GCCGCACCCTTTACGGTTTCGG 290566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074530727276