Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq318 603 3e-168 seq60 493 4e-135 >seq318 Length=132058 Score = 603 bits (668), Expect = 3e-168 Identities = 722/978 (74%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||||| ||| | ||||| || |||||||| || || | |||||||| || || ||| Sbjct 95138 TTCTGTGAATGGATTACAAGCACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTT 95079 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| || || |||| ||| || || || |||| |||||||| || || Sbjct 95078 ATGATCCCTACTCTATTAACTGCAACTTCTGTTTTCATTATCGCTTTTATCGCTGCTCCT 95019 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || || || ||||| || |||||||| || || || || | | ||||||||||| Sbjct 95018 CCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAAC 94959 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || ||||| || || || |||| || || || || || || ||||| || || || Sbjct 94958 ATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATT 94899 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| ||| | |||||||| ||||| || ||||| | || Sbjct 94898 TGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTT 94839 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | ||| | ||||| ||| | | |||||||| |||| | | Sbjct 94838 TGCCACTTCTTCCTTGGAATCTGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGT 94779 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 ||||| ||| | || ||||| ||||| || | |||||| | |||| ||| |||| Sbjct 94778 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 94719 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || || || | |||||| | || ||||| ||| ||||||||||||||||||||| Sbjct 94718 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATC 94659 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 |||||||| || ||||| ||| ||||||||||||| || ||||| ||||||||||| || Sbjct 94658 TCTGGTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 94599 Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 ||||||||||| ||||||||||| || |||||||| || | ||||||||||||||||| Sbjct 94598 TTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGT 94539 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 | |||||||| || | ||| ||||| |||||| | | ||| ||| ||| Sbjct 94538 TCACTAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGT 94479 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || |||||||| || || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 94478 TACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGT 94419 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 | | || || ||||| ||||||||||| || ||||||||| | || ||||| || ||| Sbjct 94418 CGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCT 94359 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAAC 20129 ||| || || | || || ||| |||| | | || || | |||||||| |||||| Sbjct 94358 GCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAAC 94299 Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAAGATAATCCCAAC 20188 || || || || ||||| ||||| |||||||||||| ||| | ||| | ||| || Sbjct 94298 CTAAACGGATTCAACTTCAACCAATCAGTAGTTGAT-TCACAAGGACGTGTTATCAACAC 94240 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 |||| |||| | | || | |||||||| || | ||||||||||||||||| || || Sbjct 94239 TTGGGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGC 94180 Query 20249 TCATAACTTCCCACTTGA 20266 ||| |||||||||||||| Sbjct 94179 TCACAACTTCCCACTTGA 94162 >seq60 Length=599436 Score = 493 bits (546), Expect = 4e-135 Identities = 699/980 (71%), Gaps = 6/980 (1%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || ||||| || || || | || | ||||||||||| | ||||| ||| Sbjct 100587 TGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGTTTAATGATCCCT 100528 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | || || |||| | || |||| ||||||||||| |||||||||||| Sbjct 100527 ACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGAT 100468 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| || | || || ||| | ||||| ||||| || || | Sbjct 100467 ATTGATGGTATCCGTGAGCCTGTAGCTGGATCTTTATTATACGGTAACAACATCATCAGT 100408 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || || | || || || || ||||| || | ||||| || || || |||||||| Sbjct 100407 GGTGCTGTTATACCTAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAGCT 100348 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | | || ||||||||||||||||| ||||| || ||| | | || ||||| ||| Sbjct 100347 GCTTCAATTGAAGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTC 100288 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||||| || || || | ||| | | |||||||| ||| | ||||| ||| Sbjct 100287 TTAATTGGTGTTGCTTGTTGGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGTATG 100228 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||||| | || ||| || ||||||| ||| || || | Sbjct 100227 CGTCCTTGGATTTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTA 100168 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 |||||||| | || ||||| ||||| |||||||||||| | ||||| |||||||| Sbjct 100167 GTTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGTACG 100108 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 |||||||| ||| |||| |||||||| ||||| || || | ||||| || ||||| ||| Sbjct 100107 TTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCCATATG 100048 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| || |||||||| || | ||| ||||||||||||| ||| || Sbjct 100047 GCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTA 99988 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 ||||| | || ||||||| || | || ||| ||||| || || || ||| Sbjct 99987 ACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAATTC 99928 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||| || || |||||||| | || || Sbjct 99927 GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATT 99868 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||||||| |||||| || ||| | ||||||||||||| ||||| | | || Sbjct 99867 TTCCAATATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCT 99808 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || ||||| || ||| | || | | || | | |||||||| |||||| | || ||| Sbjct 99807 GTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAACGGT 99748 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACG--GAAAGATAATCCCAACATGGGCT 20195 |||||||| ||||| || || |||||| || || | | |||| | ||||||||| Sbjct 99747 TTTAACTTCAACCAATCTGTTGTTGATAGTGAAGGTCGTGTTATAAAC---ACATGGGCT 99691 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 || | | || | || | | || | ||||| |||||||| || || ||||||||| Sbjct 99690 GACATCATTAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAAC 99631 Query 20256 TTCCCACTTGATTTAGCTTC 20275 |||||| | |||||||| || Sbjct 99630 TTCCCATTAGATTTAGCATC 99611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440344441392