Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq6 95.1 5e-15 >seq2 Length=6328565 Score = 116 bits (128), Expect = 2e-21 Identities = 136/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 7927 GACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCG--ACGTCC 7984 ||||| || || ||||| || | | ||||| | || | || ||||||| ||| | Sbjct 5308323 GACGAATGCTCCATGGTGGATGAGGAACTCGGTAAGGATTTGCTGTCCTTCGGAACG--C 5308380 Query 7985 CCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTCTTCA 8044 | |||| ||||| ||||||||||||||||| ||||| |||| || || |||| || | Sbjct 5308381 CGGTCCTTGTGCTGGGCGACCCGGCCCAGCTGCCGCCTGTCAAAGGTGGAGGCTATTTTA 5308440 Query 8045 CGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAACCCCA 8104 | || || | ||||| ||||||||||||| |||| ||||||||| ||||||| || | Sbjct 5308441 CCGAAGCTGAACCGGATGTGATGCTGACGGAAGTCCATCGCCAGGCCCAGGACAATCCTA 5308500 Query 8105 TC 8106 || Sbjct 5308501 TC 5308502 >seq6 Length=3173221 Score = 95.1 bits (104), Expect = 5e-15 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 9374 CTATCGGTCCATCAACGCCGAGAACCTCTGGGAGATGATCATGCGGTCCACGTGGGACTG 9433 ||| || || | || ||| || | ||||||| | |||||| ||| | |||| Sbjct 2944421 CTACCGCACCCTGAAAGCCCAGTTCATCTGGGACACCATCATGACCAGCACCTACGACTA 2944480 Query 9434 GGCCGAGCCCGG---CACCCTGTTCATCGACCAGATCAACCGCATGAACAATCTCAAGTA 9490 ||||| || || || |||| |||||| || |||| | |||||||| | || Sbjct 2944481 TGCCGAACCGGGTTTCATCCTG---ATCGACAAGGTCAATCAGATGAACAACAACTGGTT 2944537 Query 9491 CTGCGAGACCATCGCCGCCACCAATCCCTGCGGCGAGCAGCCCCTCCCACCGTACGGTGC 9550 |||||| |||| ||||||||| ||||| || ||||||||||| || |||||||| Sbjct 2944538 CTGCGAAGACATCCGCGCCACCAACCCCTGTGGTGAGCAGCCCCTGCCCCCGTACGGCAG 2944597 Query 9551 CTGCCTCTTGGGCTCCTTCAACCT 9574 |||||| |||||||| | ||||| Sbjct 2944598 CTGCCTGCTGGGCTCCGTGAACCT 2944621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203550184061720