Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 >seq1 Length=7344524 Score = 224 bits (248), Expect = 1e-53 Identities = 493/729 (68%), Gaps = 15/729 (2%) Strand=Plus/Minus Query 33177 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 33236 |||||| || || ||| || || || || | || | |||||| | |||||| ||| Sbjct 2684195 ATTCATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTAC 2684136 Query 33237 CGCATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCG---GTGGATGCAATAAATGTT 33292 |||| | |||||| ||| || || |||| | | ||||||| | | | | Sbjct 2684135 GGCATTGGCAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGTGA-TCAT 2684077 Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 | ||| |||||| || || || ||||||| |||||| || | || || | || || | Sbjct 2684076 TGTACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAG 2684017 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 | || | || || ||||| | |||||||| || | ||| || || ||| ||| || | Sbjct 2684016 AGAAGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAAC 2683957 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472 ||||||||||||| || || ||||| |||||||| || || | ||| | | | Sbjct 2683956 CAGAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCAT 2683897 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | ||| ||||| ||||| || || || || ||||| || || || || | Sbjct 2683896 TCTCA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGA 2683840 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| || || || |||| |||||| || | ||||||| ||| || ||||| | || Sbjct 2683839 TGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGG 2683780 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 || | ||||| || || || || || |||||||| |||||||| || | |||| Sbjct 2683779 AGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCT 2683720 Query 33653 CGGTAATCTGTACTTCTG-TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 | ||| |||||| || | |||||| | | |||||| || || || || || |||||| Sbjct 2683719 CCGTATACTGTACCTCGGCTACAAAGTTCT-CCGCCAGGTTCTCGTTTACGATCCCGTCA 2683661 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT- 33769 ||| |||||||| |||| |||||||||||| || | || || | || |||||| Sbjct 2683660 GAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGT-TTAGTTT 2683602 Query 33770 --TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 |||||||||| | | |||| | || | || ||| | ||||| || | || Sbjct 2683601 GCTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGC 2683542 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || | ||| ||||| | ||||||||||| || ||||| ||||| | |||||||| Sbjct 2683541 TTCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCG 2683482 Query 33888 ATTTGGATT 33896 ||| || || Sbjct 2683481 ATTCGGGTT 2683473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941500033120