Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq494 87.8 2e-12 seq3 86.0 7e-12 seq19 84.2 2e-11 >seq2 Length=6328565 Score = 104 bits (114), Expect = 3e-17 Identities = 171/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| || |||||| || | | || || ||||| ||| |||||| | || Sbjct 2248484 TCGCCCGGCTGCAGCAAAGCCAGAAAGACGGCCTGGTTCATCTGGCTACCGGAGTTCGGC 2248425 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 || || || || || | || || ||||| || || || || || ||||| | ||| Sbjct 2248424 TGCACATTGGCAAATCCGGCACCGAAGAGTTCCTTTGCGCGTTCGATCGCCAGCGTTTCG 2248365 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 | ||||| | | |||||||||||||| || ||||| ||||| || |||||||| Sbjct 2248364 GCGACGTCGGCGAATTCGCAACCGCCGTAATAACGCTTGCCCGGATAGCCTTCAGCATAT 2248305 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213 |||||||| || || ||||| ||||||| || ||| | ||| || |||||| || Sbjct 2248304 TTGTTGGTGAAGATCGAACCCTGCGCTTCCAGAACCGCTCGGGAAACGATGTTTTCAGAC 2248245 Query 7214 GCAATCA 7220 ||||||| Sbjct 2248244 GCAATCA 2248238 >seq494 Length=51301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 6467 AGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGA 6526 || |||||||||||| | ||||| || ||||| |||||||| | |||||| ||||| Sbjct 5695 AGGGCTTCACCGAAGGCCACGGCCTTGGCGGCGATGACATGCATCAGCGGACCGCCCTGG 5754 Query 6527 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6586 | || ||||||| || || || | || || ||||| | | ||||| || || | Sbjct 5755 AGGCCAGGGAAGACCGCGGAGTTGATCTTTTTCGCGATGGCTTCGTCGTTGGTCAGGACC 5814 Query 6587 AGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGC 6642 | || ||||| |||||||||| | |||||| || || | || || || || || Sbjct 5815 ATGCCGCCACGGGGGCCGCGCAGCGATTTATGCGTGGTGGTGGTGACCACATCGGC 5870 >seq3 Length=4400433 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| ||| ||| | || || || || || ||||| || |||| || || || || || Sbjct 92884 CAGCAGCGCTTGGAACACGGCCTGATTGGCTTGTGAGCCAGAATTCGGCTGGACATTCGC 92943 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 || ||| ||||| |||||| || || ||| || | ||| |||| | ||| | Sbjct 92944 AAACCCGCACTCAAACAATTCTTTGGCCCGGTCACGCGCGATGTTTTCGACTACGTCGAC 93003 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | | || ||||| ||||| || |||||||| || || |||||||||||||| | Sbjct 93004 ATATTCGCAGCCGCCATAATAACGCCGCCCTGGATAGCCTTCCGCATACTTGTTGGTCAG 93063 Query 7165 AATAGAACCTTGCGCTT 7181 | | |||||||||| Sbjct 93064 CACGGTGCCTTGCGCTT 93080 >seq19 Length=1029424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 10/166 (6%) Strand=Plus/Plus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACT--AA 7058 ||||| ||| ||||| ||||||||||| || || ||||| ||| | ||| | || Sbjct 887976 ACAGCAGAGTTGGCCTGGGAACCGGAATGCGGCTGCACGTTGGCGTAG--GCAGCGCCAA 888033 Query 7059 ACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG---ATCTCATCGGCTTTTACACAAC 7115 |||| || || || |||||||| ||||| | ||| || || || || | || | Sbjct 888034 ACAGCTCCTTTGCGCGCTCAATCGCCAGATCTTCGGCAATATCCACGAATT---CGCAGC 888090 Query 7116 CGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 |||||||||| || ||||| ||||| || || || |||||||| || Sbjct 888091 CGCCGTAATAGCGCTTGCCCGGATAGCCTTCCGCGTACTTGTTAGT 888136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553348536814560