Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 242 1e-58 >seq1 Length=7344524 Score = 242 bits (268), Expect = 1e-58 Identities = 1134/1776 (64%), Gaps = 41/1776 (2%) Strand=Plus/Plus Query 363378 CGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGG 363437 ||| | ||| | ||||||| || || ||||| || ||||| || |||||| Sbjct 2684911 CGAATTTGACTTCTTCGGATTCAAAACCCTGGAGCGTTCTTACCTGATGCGCGCCAATGG 2684970 Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 | | || || || |||||||||||||| ||||| ||||| | || ||||| | | Sbjct 2684971 CAAGGTGGTGGAGCGTCCGCAGCATATGTTGATGCGCGTTGCGGTAGGCATCCACGGAAC 2685030 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGC 363553 ||| |||| | | | || || ||||| || ||| || | || ||| ||||| Sbjct 2685031 AGATATTGAGAGTGTGCTGGAGACGTATAACCTGATGTCTCAGAAGTGGTTTATCCACGC 2685090 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 || || || | | ||||| | || | ||||| |||| ||||| | Sbjct 2685091 T----ACTCCTACCCTCTTTAATGCGGCCACACCACGCCCACAATTGTCGAGCTGCTTCC 2685146 Query 363614 TTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTC 363673 || | |||| ||| ||| ||| ||||| || || || || | ||||| | Sbjct 2685147 TTTTGTCGATGACGGAAGATAGCATTCCCGGTATTTTCGAAACCCTCGACCGCTGTGCGC 2685206 Query 363674 TTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACA 363733 |||||| || || || || |||||| | || || || | || || || | Sbjct 2685207 GCATTTCCCAGTCGGCTGGTGGTATTGGTTTGAGCATTCATAACATCCGGGCTAAGGGTA 2685266 Query 363734 GTTACATTCGCGGCACAGGGGGATACTCG-AATGGGCTGGTTCCCATGCTTCGTGTGTTT 363792 | ||||| || ||||| || ||| | || || | || || ||| | || || Sbjct 2685267 GCTACATCAAAGGTACAGGCGG-TACCAGCAACGGTATTGTACCGATGTTGAAAGTATTC 2685325 Query 363793 GACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATG 363852 || | ||||| | ||||| ||||||||||| || ||||| ||||| || || ||||| Sbjct 2685326 AACGACACTGCCCGCTACGTTGACCAGGGTGGTGGTAAGCGTAAAGGTGCCTTCGCTATT 2685385 Query 363853 TATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGA 363912 || || ||||| || || ||| | || || || || || || ||||||| || Sbjct 2685386 TACCTGGAGCCCTGGCACGCAGATGTATTCGACTTCCTGGAACTGAAGAAAAACCACGGT 2685445 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || || || ||||| || ||||| ||||||| || | ||| || | || || ||| Sbjct 2685446 AAGGAAGAGTTGCGCGCTCGTGACTTGTTCTACGCTATGTGGATTCCGGATTTGTTCATG 2685505 Query 363973 AAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 |||||| | | | | ||||| || || || | ||| || ||| Sbjct 2685506 CGCCGCGTGAAAGAAAACGGCGACTGGTCGCTGTTCGATCCGAATGAAGCACCGAATCTG 2685565 Query 364033 TCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG 364092 | || ||| ||| ||| | | || || || | ||||| || |||||| Sbjct 2685566 TTTGACGTACACAGTGGCGAGTTCGAAGCACTCTATCATAAGTACGAGCAGGAGGGTCGT 2685625 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || || || | ||||| | | ||||| || || |||| ||||| || Sbjct 2685626 GCCCGCAAAGTGGTAAAAGCACAAGATTTGTGGTTCGCTATTTTGGAAAGCCAGATCGAA 2685685 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || ||||| ||||| | ||||| ||| || |||||||||| |||||||||| || Sbjct 2685686 ACCGGTACACCGTATATCCTTTACAAGGATGCGGCCAACCGCAAGAGCAACCAGCAGAAC 2685745 Query 364213 CTTGGTACAATTCAGCAGAGCAA-CCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 || ||||| || | |||| ||| ||| ||||||||||| || || ||||| || || || Sbjct 2685746 CTGGGTACCATCC-GCAGCTCAAACCTTTGTACCGAGATCATCGAGTACACTGCACCTGA 2685804 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGG 364328 || || ||||||||||| ||| | || || | |||| |||| || Sbjct 2685805 TGAAGTAGCGGTATGTAACCTCGCGAGTTTGGCACTGGGTAAATACGTAAAAGAAGACGG 2685864 Query 364329 TACTTTTGACCACCAGCATCTTTATGACGTAACC--TATCATGCTACTTGCAATCTCGAC 364386 |||| ||| ||| || || || |||||| |||| || || |||| || || Sbjct 2685865 CACTTACGACTTTGAGCGCCTGTACGAAGTAACCCGTATCGTG--ACCCGCAACCTGAAC 2685922 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||||||||||| | || || || || ||| || || | ||||||||||||| Sbjct 2685923 AAGGTTATCGATATCAACTACTACCCTATTGAGGAGGCACGCAATAGTAATATGCGTCAT 2685982 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGC---TGACGTTTTTATGATGCTCAAGATG 364503 ||||| || ||| | ||||||||||| | || || | | || |||||| | | Sbjct 2685983 CGCCCAATCGGTTTGGGTGTACAGGGTTTGGCGGATGCCTTCATTTTGATGCGCTA---C 2686039 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 |||||||| || || || | || || || || ||||| || || || | | Sbjct 2686040 CCATTTGATAGCGAGGAGGCACGCCAATTGAACAAAGACATTTTTGAGACCATCTACTAT 2686099 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || || |||| | |||| ||| |||| | ||| || | ||| | |||| | Sbjct 2686100 GCGGCCCTGACGGAAAGCTGTGCCCTGGCCAAAGAGCAA-GGTACTTACGAGAGTTATAA 2686158 Query 364623 GGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 ||| || || | || |||| | | |||| |||| | ||| ||| |||||| | Sbjct 2686159 GGGCTCACCAGCCAGCG-AGGGTGTACTGCAGTATGATATGTGGGGTGTGACGCCAAGCG 2686217 Query 364682 TCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 || ||| | |||| ||| || |||||||| |||| |||||| | Sbjct 2686218 AACGTTGGGATTGGGCCGAGCTGAAGAAGGACATTAAGAAGAATGGCCTGCGCAACAGCT 2686277 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 | | |||||| ||||| || |||||||| | |||||||| || |||||||| || | Sbjct 2686278 TGCTGGTAGCGCCAATGCCAACTGCTTCTACCTCTCAGATCCTGGGCAACAACGAATGTT 2686337 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||| || | || |||||| | || ||||| ||||| || ||||| | | Sbjct 2686338 TCGAGCCATACACCAGCAATATCTACAGCCGCCGTACGCTTTCTGGTGAATTCGTAATCG 2686397 Query 364862 TTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 | || ||| |||| | ||| | ||| | | || ||||| ||| |||||| Sbjct 2686398 TGAACAAGCACCTGCTGCGCGATTTGAACCGTCTG-GGCTTGTGGAACGACGATATGAAG 2686456 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT-TTCCAGAAGATCT 364979 || | || ||||| || ||||| | |||| | || | ||| |||| |||| | Sbjct 2686457 CACCGCCTGATGGCCGCCAACGGTTCGATTCAGAGC-TTTGACGATATTCCTCAAGAATT 2686515 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC-TCATT---GATATGG 365035 ||| | | ||||| || ||||||||||| || || | | | ||||| ||||||| Sbjct 2686516 AAAGGATCTGTACAAGACGGTATGGGAAAT---CA-GCCAGCGCGTCATTATCGATATGG 2686571 Query 365036 CGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGC 365095 | ||||| || ||||| | ||||||||||||||| | ||| | || | | | Sbjct 2686572 CTGCCGACCGGGGTGCATACATCTGTCAGAGCCAGAGTATGAACCTCTTTGTACAGAACC 2686631 Query 365096 CAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 |||||| | |||||| | || ||||| ||||||| Sbjct 2686632 CAACCTTTGGCAAGCTGTCGTCGATGCACTTCTACG 2686667 Score = 167 bits (184), Expect = 6e-36 Identities = 492/756 (65%), Gaps = 7/756 (1%) Strand=Plus/Plus Query 22198 CATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAAT 22257 || || || ||| || | || || || ||||| || | ||||| || || ||||| Sbjct 2683623 CACTTCATAAAACATGTACTGGCCTTTTTTGCGGCCTCTGACGGGATCGTAAACGAGAAC 2683682 Query 22258 CTAGTGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTG 22317 || | | || |||| | | || | || || | ||||||| || ||||| || | Sbjct 2683683 CTGGCGGAGAACTTTGTAGCCGAGGTACAGTATACGGAGGCCAAATTCTTCTACGGCTTT 2683742 Query 22318 CAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTA 22377 || || ||||| || ||| | ||| |||| || || || || | | | ||| || Sbjct 2683743 CAGATCATGATGGAGAATATCCACTCGGAGACTTACTCCCTGCTCATCGA--CACCTATA 2683800 Query 22378 G--AAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTA 22435 |||| | | | ||| || || | ||| ||| || ||| | | | | | Sbjct 2683801 TTAAAGACACAAAGGAAAAAGACTACCTGTTCAACGCCATCGAGACCCTGGACTGCGTAA 2683860 Query 22436 AGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTC 22495 |||| || || || ||||| || ||||| | |||| |||| ||||| || || | Sbjct 2683861 AGAAAAAAGCGGAGTGGGCCTTGCGTTGGATTGAGAATG---GTTCCTTCGCTGAGCGCC 2683917 Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 | || || ||||| | || || || || ||||||||||| | || ||| | ||||| | Sbjct 2683918 TCATCGCCTTTGCAGCAGTGGAGGGTATCTTCTTTTCTGGTTCGTTCTGTTCGATCTTCT 2683977 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 || | || || |||| | ||||||||||| | || || |||||||| || ||||| | Sbjct 2683978 GGTTGAAGAAGCGTGGTTTGATGCCGGGTCTGAGCTTCTCTAATGAGTTGATCAGCCGTG 2684037 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAAC 22675 |||||||| | || || ||||| ||| |||| || |||| ||||| || || | Sbjct 2684038 ATGAGGGTATGCACTGTGACTTTGCCTGTTTGCTGTACAATGATCACATCATCCACAAGC 2684097 Query 22676 TTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTA 22735 | ||| | || || || | ||||||| | ||||| || ||| ||||| |||| Sbjct 2684098 TACCAAAAGATACGGTGAGAGGTATTATTGCCAATGCCGTAGAAATTGAAAAGGAATTTG 2684157 Query 22736 TTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATA 22795 | || || | || ||| | || |||||||| |||||||| ||| | || | Sbjct 2684158 TAACGGATGCCCTCCCCGTAGGACTGATTGGTATGAATGCCGACCTGATGTGCCAGTACA 2684217 Query 22796 TTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCG 22855 | | ||||| || || || || | | | || | | ||| | ||||| | Sbjct 2684218 TCGAGTTTGTAGCCGACCGCCTGCTGGTAGCGCTGAAGCACGATAAGATCTTCAACGTAG 2684277 Query 22856 TTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAA 22915 || ||||| ||||||||| || || || | ||||| || ||||| |||||||||| Sbjct 2684278 AGAACCCATTCCCATGGATGGACCTGATCTCTTTGGAAGGTAAAACCAACTTCTTCGAAA 2684337 Query 22916 AAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 | | || || || ||||| || ||||| |||| Sbjct 2684338 AGCGCGTGGGCGACTACCAGAAGAGTGGTGTAATGG 2684373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341376172424