Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq493 122 2e-23 >seq493 Length=52014 Score = 122 bits (134), Expect = 2e-23 Identities = 319/484 (66%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 754 GCCATTTCAGGTCGCCATCCTGAACGCCATGGGTAACGACCTGATTCGGGTCGTAAACTT 813 ||| |||||| |||||| |||| || ||||| | |||| || || | || || | Sbjct 453 GCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGT 512 Query 814 CGTGAAGTCGGCACGCATCGGCTACACGAAAATGCTGATGGCCAACATCGGCTACAAGAT 873 |||||||| || || |||| || | ||||||||| ||| | |||| || Sbjct 513 GGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTAT 572 Query 874 TCAGCACAAGCGCCGTAATGTGCTGATGTGGAGCCCGACTGACCCAGACGCCGAGGGGAT 933 |||| |||| || || || || ||| ||||| || || |||||| | Sbjct 573 AGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTT 632 Query 934 CAGCAAGAGCCACGTTAATG-GCCTGATTCGCGATGTTCCGGTGCTGCTGGCGCTGGCCC 992 | || | ||||||| | | || ||||| ||| ||||| ||||||||||||||||| Sbjct 633 TATGAAAACCCACGTTGAGCCGACT-ATTCGTGATATTCCGTCGCTGCTGGCGCTGGCCC 691 Query 993 CATGGTATGGCCGCAAGCATAGCGACAACACGCTCGACACCAAGGTGTTTGCAAACCGGC 1052 | ||||||||| ||||| | || ||||||||| || ||| || | || ||| Sbjct 692 CGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCATGAAGCGTTTCACTAATGGGC 751 Query 1053 GGACCCTTTGGACGCTCGGCGGCAAGGCTGCTCGCAACTACCGTGAGAGATCTGCCGACG 1112 | | | ||| || ||||| || || || ||||||||||| | || | || | Sbjct 752 GTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAAGTCGGTGGATG 811 Query 1113 AGGTGATCTATGACGAGCTGTCGAAGTTCGACGCCGATATTGAAGGTGAAGGTTCCCCAA 1172 || | ||||| || || | || || | ||||||||| ||||| || || | Sbjct 812 TGGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAACAGGAAGGCTCTCCGA 871 Query 1173 CGTTCCTTGGCGACCAACGTCTGCGCGGTGCTGTTTACCCGAAGTCCATCCGTGGATCGA 1232 ||||||| || ||| | ||| | || | || | || |||||||||||||| || | Sbjct 872 CGTTCCTGGGTGACAAGCGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCA 931 Query 1233 CGCC 1236 |||| Sbjct 932 CGCC 935 Score = 122 bits (134), Expect = 2e-23 Identities = 319/484 (66%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 754 GCCATTTCAGGTCGCCATCCTGAACGCCATGGGTAACGACCTGATTCGGGTCGTAAACTT 813 ||| |||||| |||||| |||| || ||||| | |||| || || | || || | Sbjct 5244 GCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGT 5303 Query 814 CGTGAAGTCGGCACGCATCGGCTACACGAAAATGCTGATGGCCAACATCGGCTACAAGAT 873 |||||||| || || |||| || | ||||||||| ||| | |||| || Sbjct 5304 GGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTAT 5363 Query 874 TCAGCACAAGCGCCGTAATGTGCTGATGTGGAGCCCGACTGACCCAGACGCCGAGGGGAT 933 |||| |||| || || || || ||| ||||| || || |||||| | Sbjct 5364 AGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTT 5423 Query 934 CAGCAAGAGCCACGTTAATG-GCCTGATTCGCGATGTTCCGGTGCTGCTGGCGCTGGCCC 992 | || | ||||||| | | || ||||| ||| ||||| ||||||||||||||||| Sbjct 5424 TATGAAAACCCACGTTGAGCCGACT-ATTCGTGATATTCCGTCGCTGCTGGCGCTGGCCC 5482 Query 993 CATGGTATGGCCGCAAGCATAGCGACAACACGCTCGACACCAAGGTGTTTGCAAACCGGC 1052 | ||||||||| ||||| | || ||||||||| || ||| || | || ||| Sbjct 5483 CGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCATGAAGCGTTTCACTAATGGGC 5542 Query 1053 GGACCCTTTGGACGCTCGGCGGCAAGGCTGCTCGCAACTACCGTGAGAGATCTGCCGACG 1112 | | | ||| || ||||| || || || ||||||||||| | || | || | Sbjct 5543 GTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAAGTCGGTGGATG 5602 Query 1113 AGGTGATCTATGACGAGCTGTCGAAGTTCGACGCCGATATTGAAGGTGAAGGTTCCCCAA 1172 || | ||||| || || | || || | ||||||||| ||||| || || | Sbjct 5603 TGGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAACAGGAAGGCTCTCCGA 5662 Query 1173 CGTTCCTTGGCGACCAACGTCTGCGCGGTGCTGTTTACCCGAAGTCCATCCGTGGATCGA 1232 ||||||| || ||| | ||| | || | || | || |||||||||||||| || | Sbjct 5663 CGTTCCTGGGTGACAAGCGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCA 5722 Query 1233 CGCC 1236 |||| Sbjct 5723 CGCC 5726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125314110697624