Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq53 156 4e-33 seq63 141 9e-29 seq36 136 4e-27 seq1 100 3e-16 seq115 98.7 9e-16 seq10 96.9 3e-15 >seq53 Length=625924 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| | |||||| | || | ||||||||||| || |||||||| ||||| Sbjct 124940 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 124999 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 125000 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125059 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| |||||||| | || | || | || || | || ||| | Sbjct 125060 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG-TCGATCGTGTCCGAGGGCTCCA 125118 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || | ||| || || || || || || ||||| ||||||||| Sbjct 125119 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| | |||||| | || | ||||||||||| || |||||||| ||||| Sbjct 125168 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125227 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 125228 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125287 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| |||||||| | || | || | || || | || ||| | Sbjct 125288 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG-TCGATCGTGTCCGAGGGCTCCA 125346 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || | ||| || || || || || || ||||| ||||||||| Sbjct 125347 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||||| | |||||| | || | ||||||||||| || |||||||| |||| Sbjct 124711 AGCCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 124770 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| | Sbjct 124771 TGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGG 124830 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCG 131184 |||| || || ||||| ||| |||||||| | || | || | || || | || ||| Sbjct 124831 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG-TCGATCGTGTCCGAGGGCTCC 124889 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | ||||| || | ||| || || || || || || ||||| ||||||||| Sbjct 124890 ACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| | |||||| | || | ||||||||||| || |||||||| ||||| Sbjct 125396 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125455 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 125456 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125515 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| |||||||| | || | || | || || | || ||| | Sbjct 125516 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG-TCGATCGTGTCCGAGGGCTCCA 125574 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || | ||| || || || || || || ||||| || |||||| Sbjct 125575 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGC 131163 | | |||||||||||||| ||||| || || ||||| ||| |||||||| | || | Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG- 126211 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | || ||| | ||||| || | ||| || || || || || || ||| Sbjct 126212 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACG 126271 Query 131224 AAAATCTGC 131232 ||||||||| Sbjct 126272 AAAATCTGC 126280 >seq63 Length=566113 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| | |||||| | || | ||||||||||| || |||||||| ||||| Sbjct 328820 GCCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 328879 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 328880 CAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 328939 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| |||| | || | || | || |||| || || | Sbjct 328940 GATGCCCTCCTTGTCCTGGATCTTCGGCTTCACGCCG-TCGATCGTGTCGGAGGGTTCTA 328998 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | ||| || || || || || || ||||| ||||||||| Sbjct 328999 CGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCATG 329048 Score = 122 bits (134), Expect = 8e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| || ||||| ||||||| |||||| |||||| |||||||| || ||| ||| Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGC 131163 | | |||||||||||||| ||||| || || ||||| ||| || ||||| | || | Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCG- 329559 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | || ||| | ||| | ||| ||||| || || || ||||| || || Sbjct 329560 TCGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACA 329619 Query 131224 AAAATCTGC 131232 || |||||| Sbjct 329620 AAGATCTGC 329628 >seq36 Length=729648 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || || || | || | |||||||| || || |||||||| |||||| Sbjct 222049 CCGCCGCGCAGGCGAAGAACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 221990 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 221989 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGGG 221930 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| |||||||| | || | || | || || | || ||| | Sbjct 221929 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG-TCGATCGTGTCCGAGGGCTCCAC 221871 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 221870 GTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 221822 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 131042 ACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGT 131101 || |||| || |||||||| ||||||| ||||| |||||| ||||||||||| || Sbjct 220069 ACACCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAA 220010 Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GC 131160 |||| | ||||||||||||||| ||||| || || ||||| |||||| ||||| | || Sbjct 220009 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGC 219950 Query 131161 TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTT 131220 | || | || || | || ||||| || | ||| | ||| || || || ||||| || Sbjct 219949 CG-TCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTG 219891 Query 131221 ACGAAAATCTG 131231 ||||||||||| Sbjct 219890 ACGAAAATCTG 219880 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||||| |||||| |||||| ||||||||||| ||| ||| Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGC 131163 | | ||||||||| || || ||||| || || ||||| ||| |||||||| | || | Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG- 220421 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | || ||| | ||| | ||| | ||| || || || || || || ||| Sbjct 220420 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220361 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 220360 AAGATCTGCATG 220349 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||||| |||||| |||||| ||||||||||| || ||| Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGC 131163 | | ||||||||| || || ||||| || || ||||| ||| |||||||| | || | Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG- 220910 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | || ||| | ||| | ||| | ||| || || || || || || ||| Sbjct 220909 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220850 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 220849 AAGATCTGCATG 220838 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||||| |||||| |||||| ||||||||||| || ||| Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGC 131163 | | ||||||||| || || ||||| || || ||||| ||| |||||||| | || | Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG- 221402 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | || ||| | ||| | ||| | ||| || || || || || || ||| Sbjct 221401 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 221342 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 221341 AAGATCTGCATG 221330 >seq1 Length=7344524 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| | || || ||| | ||||| ||||||||||| |||| ||| | || || ||||| Sbjct 2686350 GTGTATGGCTCGAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAGAAGCAGTTGGCATT 2686291 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||| |||| || ||||||||||| | |||||| ||||| | ||| ||| || Sbjct 2686290 GGCGCTACCAGCAAGCTGTTGCGCAGGCCATTCTTCTTAATGTCCTTCTTCAGCTCGGCC 2686231 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 |||||||| | | ||| |||| ||||||| || ||||||| | ||||||||| Sbjct 2686230 CAATCCCAACGTTCGCTTGGCGTCACACCCCACATATCATACTGCAGTACACCCTCGCTG 2686171 Query 145289 GCGGG 145293 || || Sbjct 2686170 GCTGG 2686166 >seq115 Length=378902 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGAC-TGGGCGATGAAGTGGATCAACAGCAGCACC--G 46141 |||| |||||||| ||| || ||| |||||| || |||| |||| | | ||| | Sbjct 238242 TGCCTTGCGTGCG-AAGGAAGGCGAGGTGGGCGCTGCGGTGGTGCAAC--CCGGACCTGG 238298 Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 || | ||||| ||||| | || || || ||| ||||||||| |||| || || |||| Sbjct 238299 CGTCCTTCGCGGAGCGGCTCGTTGCGTTCGCGGCCGTGGAGGGCATCTTCTTCTCCGGCA 238358 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 | || |||| |||| | |||||| ||| | |||||||||||| || | Sbjct 238359 GCTTCTGCGCCGTCTTCTGGCTCAAAAAGCGCGGCCTGATGCCCGGCCTGTGCTTCTCGA 238418 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||||| || ||||||||||||||||| || ||||| || || || Sbjct 238419 ACGAGCTCATCAGCCGCGACGAGGGCCTGCACACCGACTTCGCTTGCCT 238467 >seq10 Length=1322232 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| |||| ||| |||||| | |||||| | ||||| ||| | |||||||| || Sbjct 359727 CTCGTCGGGGTCAGTGTATTCAAGGATCTCTGTGCACAGGTTGGAGGACTTGATGGTGCC 359668 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||| || | ||| || || || |||||||| ||||||||| | ||||||||||| ||| Sbjct 359667 CAGGTTCTTCTGGTTGCTCTTGCTGTTGCAAGCGTCCTTGAACAGCATGTACGGAGTGCC 359608 Query 145774 AGTCTCCACCT 145784 |||||||||| Sbjct 359607 CGTCTCCACCT 359597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008481082880