Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq36 100 2e-16 >seq36 Length=729648 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || |||||| | || || || ||||||| | || || ||| | || ||| Sbjct 219880 CAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTAGATGTCGAGCCCTCGGAC 219939 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || ||||| |||||||||||||| ||||| || || || || || ||||| ||| Sbjct 219940 ACGATCGACGGCGTGAAGCAAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 219999 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | || ||||||||||| || | || || | |||||| || |||| ||||| || Sbjct 220000 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 220059 Query 25182 CAAAA 25186 || || Sbjct 220060 CAGAA 220064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| | || Sbjct 220839 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220898 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||||| || ||| ||||| || || || || ||||| || Sbjct 220899 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220958 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| || |||| ||||| Sbjct 220959 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221018 Query 25179 ATTCAAAA 25186 || || || Sbjct 221019 ATCCAGAA 221026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| | || Sbjct 221331 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221390 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||||| || ||| ||||| || || || || ||||| || Sbjct 221391 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 221450 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| || |||| ||||| Sbjct 221451 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221510 Query 25179 ATTCAAAA 25186 || || || Sbjct 221511 ATCCAGAA 221518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324134172580