Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq493 1478 0.0 >seq493 Length=52014 Score = 1478 bits (1638), Expect = 0.0 Identities = 881/921 (96%), Gaps = 1/921 (0%) Strand=Plus/Plus Query 43762 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 43821 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 43822 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 43881 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 43882 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 43941 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 43942 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 44001 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 51332 Query 44002 TGATGCTGAATCAATGATATCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 44061 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 51333 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 51392 Query 44062 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 44121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51393 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 51452 Query 44122 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATACCGATTGCCAGACTTAAGTGAGTC 44181 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 51453 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 51512 Query 44182 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 44241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51513 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 51572 Query 44242 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGC-ATTTTTGATTTCAGAATTAGTCTG 44300 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 51573 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 51632 Query 44301 ACGGGCAATGCTGCGAAGGGCGTTTTCTTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 44360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 51633 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 51692 Query 44361 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCTGTTGTTGTC 44420 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 51693 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCCGTGGTTGTC 51752 Query 44421 ATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCGCCGCCATCATTTCCAGCTTTTGTGAAA 44480 || || ||| |||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 51753 ATACCTGGTTTCTCTCATCTGCTTCTGCTTTCGCCACCATCATTTCCAGCTTTTGTGAAA 51812 Query 44481 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 44540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51813 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 51872 Query 44541 CTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAATTCAACAGGAGATG 44600 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 51873 TTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATG 51932 Query 44601 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCTTCAGCCAGCCGCTGTGCTTTCAG 44660 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 51933 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 51992 Query 44661 TGGATTTCGGATAACAGAAAG 44681 ||||||||||||||||||||| Sbjct 51993 TGGATTTCGGATAACAGAAAG 52013 Score = 280 bits (310), Expect = 6e-71 Identities = 173/185 (94%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40169 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 40228 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47068 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 47127 Query 40229 TTACTTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCATTGATAT 40288 |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct 47128 TTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTGATGT 47187 Query 40289 TCTCCGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGAATTTGAATT 40348 |||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | Sbjct 47188 TCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGGAAGT 47247 Query 40349 TCATT 40353 |||| Sbjct 47248 GCATT 47252 Score = 280 bits (310), Expect = 6e-71 Identities = 173/185 (94%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40169 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 40228 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49848 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 49907 Query 40229 TTACTTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCATTGATAT 40288 |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct 49908 TTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTGATGT 49967 Query 40289 TCTCCGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGAATTTGAATT 40348 |||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | Sbjct 49968 TCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGGAAGT 50027 Query 40349 TCATT 40353 |||| Sbjct 50028 GCATT 50032 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43454 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 43513 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 43514 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 43570 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43454 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 43513 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 43514 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 43570 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192638325476800