Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 203 4e-47 >seq1 Length=7344524 Score = 203 bits (224), Expect = 4e-47 Identities = 606/928 (65%), Gaps = 18/928 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||||| || ||||| || || || ||||| ||||| || || || ||||| Sbjct 2684372 CATTACACCACTCTTCTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTC 2684313 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||| ||| | || | | || ||| |||| |||| | ||| || | Sbjct 2684312 CAAAGAGATCAGGTCCATCCATGGGAATGGGTTCTCTACGTTGAAGATCTTATCGTGCTT 2684253 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 || | | || | | || |||||||| || |||||||| |||||| || ||| Sbjct 2684252 CAGCGCTACCAGCAGGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATT 2684193 Query 92968 CATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC 93027 ||| || | || | ||| || || || || || | || || || || ||| | ||||| Sbjct 2684192 CATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGC 2684133 Query 93028 TTCTTTCAAGATTTC-TATTACTCTACTATTTGGTGGTTTTTGTACGAC---ATAATTGT 93083 | | ||| | | | | | || || |||||| | || || | || || ||||| Sbjct 2684132 AT-TGGCAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGTGATCATTGT 2684074 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| || || |||||||| || | ||| || || || ||||||||||| || Sbjct 2684073 ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGA 2684014 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCA 93202 | | | ||| || | || || || ||||| | ||| || || ||| || ||| | ||| Sbjct 2684013 AGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAA-CAGAACGAACCA 2683955 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||||| || ||||| ||||| |||||||| || | | || || || || |||| Sbjct 2683954 GAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAA------GGAA 2683901 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | ||||| || ||||| || ||||||||||| | || || || ||| Sbjct 2683900 CCATTCTCAATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCG 2683841 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGA 93382 || ||||| || ||||| ||| || | | ||| || || || ||||| | ||| Sbjct 2683840 ATGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGG 2683781 Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 || || | || || |||| ||||||||| || || || |||||||| || | || Sbjct 2683780 GAGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCC 2683721 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 ||||| ||| || || ||| |||| | || || || || || || || || Sbjct 2683720 TCCGTATACTGTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCA 2683661 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT-- 93560 || || |||||||| |||| || ||| ||||| || || |||||| || || || | Sbjct 2683660 GAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGTTTG 2683601 Query 93561 -TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||| |||||||| || |||| || || | || || ||||||| || | ||| Sbjct 2683600 CTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCT 2683541 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || | || || || |||| ||||| | || || || || || | ||||| ||| Sbjct 2683540 TCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGA 2683481 Query 93680 TTAGGGTTATCTTTTAGTAACGGCTCTA 93707 || ||||| ||| | | |||||||| Sbjct 2683480 TTCGGGTTGTCTACCAAGATCGGCTCTA 2683453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855704723680