Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq36 104 2e-17 seq53 98.7 8e-16 seq63 93.3 4e-14 >seq36 Length=729648 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 221823 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221882 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || ||||| Sbjct 221883 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGATCAG 221942 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 221943 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 222002 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | || | ||| | || ||||||| || Sbjct 222003 ATCCAGAAAGAGTCGACTCTCCACCTTGTTCTTCGCCTGCGCGGCGG 222049 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 220839 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220898 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || ||||| Sbjct 220899 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220958 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| ||||||| | ||| |||||| Sbjct 220959 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221018 Query 22399 ATTCAAAA 22406 || || || Sbjct 221019 ATCCAGAA 221026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 221331 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221390 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || ||||| Sbjct 221391 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 221450 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| ||||||| | ||| |||||| Sbjct 221451 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221510 Query 22399 ATTCAAAA 22406 || || || Sbjct 221511 ATCCAGAA 221518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || ||||| || || ||| | || || || || |||| || || || || || | || Sbjct 219880 CAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTAGATGTCGAGCCCTCGGAC 219939 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 || | |||| | || |||||||| || ||||||||||| || || || || || || Sbjct 219940 ACGATCGACGGCGTGAAGCAAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 219999 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 ||||| || ||||||||||| ||| | ||||| |||||| | ||| |||||||| Sbjct 220000 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 220059 Query 22402 CAAAA 22406 || || Sbjct 220060 CAGAA 220064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 220350 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220409 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || ||||| Sbjct 220410 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220469 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | ||| |||||| Sbjct 220470 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 220529 Query 22399 ATTCAAAA 22406 || || || Sbjct 220530 ATCCAGAA 220537 >seq53 Length=625924 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || ||||| || | Sbjct 125623 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125564 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 125563 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125504 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| || ||| |||||| Sbjct 125503 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125444 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || || || ||||||| || Sbjct 125443 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGG 125397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 125167 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 125107 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125048 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| || ||| |||||| Sbjct 125047 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124988 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || || || ||||||| || Sbjct 124987 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGG 124941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 125395 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125336 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 125335 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125276 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| || ||| |||||| Sbjct 125275 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125216 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || || || ||||||| || Sbjct 125215 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGG 125169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| || | Sbjct 124939 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 124880 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 124879 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 124820 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| || ||| |||||| Sbjct 124819 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124760 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 124759 ATCCAGAAGGAGTCGAC 124743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| ||||| || || || | || || || || |||| || || ||||| || | || Sbjct 126280 GCAGATTTTCGTGAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGA 126221 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | |||| | || || || || || ||||||||||| || || || || || || Sbjct 126220 CACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 126161 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || || |||||||| ||| | ||||| ||||||| || ||| |||||||| Sbjct 126160 GCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACAT 126101 Query 22401 TCAAAA 22406 || || Sbjct 126100 CCAGAA 126095 >seq63 Length=566113 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || ||||| || ||| | || || || || ||||| ||||| ||||| || | || Sbjct 329628 GCAGATCTTTGTCAAGACTCTCACGGGCAAGACCGTCACCCTTGACGTGGAGCCCTCGGA 329569 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | |||| | || || || || || ||||||||||| || || || || || || Sbjct 329568 CACGATCGACGGCGTGAAGCATAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 329509 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || || ||||| || ||| | ||||| ||||||| | ||| ||||| || Sbjct 329508 GCGCCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAATAT 329449 Query 22401 TCAAAA 22406 ||||| Sbjct 329448 CCAAAA 329443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724255501580