Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq115 100 6e-16 seq112 89.7 1e-12 seq91 89.7 1e-12 seq143 86.0 1e-11 seq9 86.0 1e-11 >seq115 Length=378902 Score = 100 bits (110), Expect = 6e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 |||||||||| ||||||| | |||| || | || || | || ||||| ||||||| Sbjct 238495 CAGCTTGTTCACCAGCTTACGGAACAGTAGGCAAGCGAAGTCGGTG-TGCAGGCCCTCGT 238437 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||||||| |||||| || | | |||||| ||||||| || || || |||||| Sbjct 238436 CGCGGCTGATGAGCTCGTTCGAGAAGCACAGGCCGGGCATCAGGCCGCGCTTTTTGAGCC 238377 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||||| ||||| ||| || ||||| | | ||||| || | | | ||||| | Sbjct 238376 AGAAGACGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCCACGGCCGCGAACGCAACGA 238317 Query 251978 GGCGCTCAGCAAACGAC 251994 | ||||| || || ||| Sbjct 238316 GCCGCTCCGCGAAGGAC 238300 >seq112 Length=381476 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 139070 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 139011 Query 142563 CCCC 142566 |||| Sbjct 139010 CCCC 139007 >seq91 Length=448529 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 419714 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 419773 Query 142563 CCCC 142566 |||| Sbjct 419774 CCCC 419777 >seq143 Length=331513 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||| ||||| ||||| || ||||||||||| || || ||||| | || || | Sbjct 82471 CTGTACTCTGATCCTCACCGAGGGAGACTCTGCCAAGACTCTGGCCGTGTCGGGGCTCGG 82530 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| | || ||||| ||| | ||||| ||| |||||||||||||||||||| Sbjct 82531 GGTGGTGGGCAGGGACAGGTACGGTGTGTTCCCGCTCAAGGGTAAGCTGCTCAACGTGCG 82590 Query 217956 CGATGCC 217962 ||| ||| Sbjct 82591 CGAGGCC 82597 >seq9 Length=1386778 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 251737 CAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGA 251796 |||||||| ||| ||| | || ||||||| || || ||| ||||| || || Sbjct 884026 CAGATGAAGCTCTTCTCGACCTCGACGGCCTCCTTGACGATGGCCATCACCGTCTCCTGA 883967 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853 ||||||||||||| |||| | ||||| || | || | |||||| ||| Sbjct 883966 CTTGGCTTGTTCTCCAGG---GAGTGGAAGAGCTGGCAGGCGAAGTCGCAGTGCAGGCCC 883910 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 || ||||| ||||| | |||||| || | ||| || ||||||| || || ||| || Sbjct 883909 TCATCGCGGCTGATCATCTCGTTCGAAAACGTCAGCCCGGGCATCAGACCCCGCTTCTTG 883850 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||||||||| ||||| ||| || ||||| Sbjct 883849 AGCCAGAAGATGGCGCAGAAGCTCCCCGAGAA 883818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827160175612