Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq394 161 3e-35 seq2 143 8e-30 seq3 134 4e-27 >seq394 Length=90345 Score = 161 bits (178), Expect = 3e-35 Identities = 207/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||| ||||||| | |||||| || | |||||||||||| || || || | ||| Sbjct 40669 CTCACCGCCGACGGTCGGCACGCCAAAGCAGTTGCCGTAACCGCCGACACCTTCGACGAC 40728 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 ||| ||||| | | | || | || || | | |||||| ||| | | ||| Sbjct 40729 GCCATGCACCAGCTGGCGGGTTTTCCAGTGATCCTTCTCACCGAAGGACAGCGAATTCAT 40788 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 |||||| ||| || |||||||||| || || |||||| | |||||||||||| || || Sbjct 40789 CGCCGCGATCGGACGCGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCCACGCCGGT 40848 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 ||||||||||||| |||| |||||| |||||||||||||||| || ||| |||||| Sbjct 40849 CGCCGCGCCCTGGTAGGGTTCGATGTACGAGGGGTGGTTGTGGCTTTCCATCTTGAA--- 40905 Query 42949 GACCGCCCA---TCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 |||| | || || || |||| ||||| || ||||||||||| Sbjct 40906 GACCACGCACTGGCCGTCACCGATGTCGACGATGCCCGCGTTCT 40949 Score = 91.5 bits (100), Expect = 4e-14 Identities = 216/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 41517 CGTCGTCGATGAGGCCGAGCACGCCCACGAGAG---GAGTGGGGTGGATCGGCACGTCGC 41573 ||||| |||| ||||| |||| || ||| | | || || |||||| | | || Sbjct 39510 CGTCGGCGATCAGGCC---CACGGCCCCGATGGTCGGGGTCGGCAGGATCGCCTGGCCGT 39566 Query 41574 CGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGC 41633 |||| | |||||||| ||| ||||| || | || ||| || |||| || | |||| Sbjct 39567 CGGTTTCGTTGTAGAGCGACACGTTGCCCGACACGATCGGCATGTCCAGCGCCTTGCAGG 39626 Query 41634 CGTCGGCGAGCCCGTCCACCGT-CTGACCGAACTGCCACATGACCTCGGGATTCTCCGGG 41692 | || ||| || | | || | ||| |||||| | ||||| |||||| || || ||| Sbjct 39627 CCTCACCGATGCCCTGGATCGCACCGAC-GAACTGGCCCATGATCTCGGGCTTTTCGGGG 39685 Query 41693 GAGCCGAAGTTCAGGCAGTCGGT-GACCGCAGTGGGCACGGCGCCGGTGACCGCGACGTT 41751 ||||||||||||| |||||| || ||| ||| ||| |||| | | | ||| Sbjct 39686 TTGCCGAAGTTCAGGTTGTCGGTCGAGGCCAG-CGGCTTGGCCCCGGCGGCGATCAGGTT 39744 Query 41752 GCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCG 41811 |||| |||||||||| | ||| ||| |||| || ||||| || | |||||| Sbjct 39745 GCGGAAGGCCTCGGCCACGGCCTGCTTGCCGCCTTCGACCGGGTTCGCCTTGACGTAGCG 39804 Query 41812 GCCGTTCGCGTCGGTCGCGA 41831 | || |||||| || || Sbjct 39805 CGGGGTCACGTCGGACGTGA 39824 >seq2 Length=6328565 Score = 143 bits (158), Expect = 8e-30 Identities = 234/336 (70%), Gaps = 1/336 (0%) Strand=Plus/Minus Query 42665 GCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTTC 42724 || |||||||| ||| | | ||| ||||| ||| || || ||||| | || Sbjct 3829262 GCATTGACCAGGCAGTTGCCGTTGTAGCGGGCATGGAATTCGACTTCACCGCCAACCGTC 3829203 Query 42725 GGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCCGC 42784 || | |||| | ||||||||||| || || |||| |||||| ||| | || Sbjct 3829202 GGTACGCCGAAGGAGTTGCCGTAGCCGCCGACGCCGGACACAACGCCGGACACCAGATGC 3829143 Query 42785 GCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGA 42844 ||| || | ||| | | ||||||| ||||| |||| |||| | ||||| || || Sbjct 3829142 TTGGTGCGCGGATGGTCAGGCTCGCCGAACCGCAGTGCGTTCATGGCAGCGACAGGCCGG 3829083 Query 42845 GCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAG 42904 || ||||||| || | ||||| | |||||||| || || ||||| ||||||||| | Sbjct 3829082 GCACCCATGGTGAACACATCGCGCAGAATGCCGCCAACCCCGGTCGCGGCGCCCTGGTAA 3829023 Query 42905 GGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCG 42964 |||||||| | || ||||||||||| |||||| |||||| |||||| || ||| Sbjct 3829022 GGCTCGATATAGGACGGGTGGTTGTGGCTCTCCATCTTGAAGACAACCGCCTGGCCGTCG 3828963 Query 42965 CCGACGTCGATGACGCCCGCGTTCT-GCCCCATCCC 42999 |||| |||| || || || |||| |||| |||| Sbjct 3828962 CCGATATCGACAACACCTGCATTCTCGCCCGGTCCC 3828927 >seq3 Length=4400433 Score = 134 bits (148), Expect = 4e-27 Identities = 237/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTC 42711 ||| ||||||| || |||||||| |||| | | ||| | ||| |||| ||||||| Sbjct 1272079 GCCGACCGCCATCGCATTGACCAGGATATTGCCATTGTAGCCTTCATGGAACTCGGTCTC 1272020 Query 42712 GCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCC 42771 ||| | | |||||| |||| || ||||| ||| || |||||| |||||| Sbjct 1272019 GCCAGCAACCGTCGGCACGCCGACACAATTGCCATAGCCGCCAATGCCGGCCACGACGCC 1271960 Query 42772 GTGCACGACCCG-CGCCGTGTCG-GGGTCGTCG-GCCGCGCCGAAGCGCAGGGCGTCCAT 42828 ||||| | | |||||| ||| | | | |||||||||| || || | || Sbjct 1271959 AG---CGACCAGGCTGCGTGTCTTGGGATGACTTGGATCGCCGAAGCGGAGCGCATTCAC 1271903 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 | |||| |||||| |||||||| | || | ||| || | |||||| || ||||| || Sbjct 1271902 CAGTGCGATCGGGCGCGCGCCCATTGTGAACACGTCTCGCAAGATGCCCCCAACACCTGT 1271843 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 ||| ||||| || | || ||||| | || ||||||||||| |||||| ||||| | Sbjct 1271842 CGCGGCGCCTTGATACGGTTCGATATAAGACGGGTGGTTGTGGCTCTCCATTTTGAAGAT 1271783 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 |||| || || |||| |||||||||||||| |||| Sbjct 1271782 CGCCGCTTGACCATCACCGATATCGATGACGCCCGCATTCT 1271742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148245111368168