Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq244 232 3e-56 seq2 205 4e-48 >seq244 Length=185980 Score = 232 bits (256), Expect = 3e-56 Identities = 450/650 (69%), Gaps = 16/650 (2%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || || ||||| | ||| |||||||| || ||||| |||| || || ||||||||||| Sbjct 83445 TCCTCAAACATGATGTAGGGATAGCCGGATTCAAATTGAATTTCGGCAATGGTCTGGAAG 83386 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAG-CCACGT-GTCGT 60027 | | || |||| ||| | || |||| | || | | ||| | || | Sbjct 83385 AACGCGCGCGCGTTGATCTTCTTTTTGCGGATCTG--CGGGTTGTCGACCATCTCGTGAT 83328 Query 60028 ACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAG 60087 | ||||||| || |||| || || | | || ||||| ||||| | | ||||| | Sbjct 83327 ATTTCTCGGTGACCGAGATTTCTGAGAAGGCCTGACCGTAGACCTTTTCCACGTCATGCG 83268 Query 60088 GAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGA 60147 | ||||| ||| ||| |||| | | |||||| || |||| |||| ||| || | | Sbjct 83267 GCGAGAACAGGTACATGTCCTCGTTTTTCTTGGCGAGTTGGAAGGTGATATCCGGGATCA 83208 Query 60148 TAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTAT 60207 || || || || || ||||| || ||||||||||| || |||||||| |||||||||| Sbjct 83207 CCACGCCCAGCGACAGCGTCTTGATGCGGATCTTCTCATCTGCGTTTTCGCGCTTGGTAT 83148 Query 60208 CCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGC 60266 ||| ||| |||| | || || ||||| || ||||||||||| || || || |||||||| Sbjct 83147 CCAAGAAACGCA-GAATATCCGGGTGATGCGCGTTCAAATAAACAGCGCCGGCGCCCTGA 83089 Query 60267 CTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATG 60326 | || ||||| ||||| | || || || || || || |||| ||||||||| || ||| Sbjct 83088 CGCGCGCCCAGCTGGTTGGCATAAGAAAAACTGTCCTCAAGAAGCTTCATCACCGGTATG 83029 Query 60327 ACTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGG 60384 || || || | ||| ||||||| ||||| ||||| || || || || | ||||| Sbjct 83028 ACGCCCGAAGACTG--GTTCTCGATGCCCTTGATCGGGGCGCCGTGTTCACGAATGTTGG 82971 Query 60385 --AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGAT 60442 || || || ||| || || ||||| || || ||||| || || | | | | | Sbjct 82970 TCAGCAT-TAAGGCC-ACGCCACCACCGCGTTTTGACAGTTGCAGGGCGGAGTTGATGCC 82913 Query 60443 TCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGCC 60502 || ||||| ||| ||||| | |||| || | | |||||| || || || ||| Sbjct 82912 GCGCCCGATCGACTCCATGTTATCCTCAAGGCGCAACAGGAAGCAGGACACAAACTCGCC 82853 Query 60503 -TGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAG 60551 ||| | | ||||||||||||||||| || || || ||||||||| Sbjct 82852 ACGCGCCTTTTTG-CCCGCGTTGAGGAAGGTGGGCGTCGCGGGCTGGAAG 82804 >seq2 Length=6328565 Score = 205 bits (226), Expect = 4e-48 Identities = 377/541 (70%), Gaps = 10/541 (2%) Strand=Plus/Minus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 |||||| ||||||| || | || ||||||| || ||| |||||||| ||| |||||| Sbjct 3370450 GGATTGGCTCGGTTGGCCGTGTCTTCGAACAGAATGTAGGGATAGCCGCTCTCGAACTGA 3370391 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGA-TCCTATC 60007 | || || ||||||||||| | ||| ||| ||| |||| |||| | | Sbjct 3370390 ATTTCGGCAATGGTCTGGAAAAAGCTTCTGGCGCGGATCTTTTTCTT-GCGAATACGCGG 3370332 Query 60008 ATCTTTTAGCCACGTGTCG-TACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGT 60066 ||| | || ||| | || ||| | || || | ||| | || ||||| | | || | Sbjct 3370331 ATCGTCTA-CCATCTCGCGATACTTTTCCGTGATGGAAAGCTGGGACATGGGCACCCCAT 3370273 Query 60067 ACACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGC 60126 | ||| | | |||| || ||||| ||| ||| ||| || ||| || || Sbjct 3370272 AGACCCGCTCCACATCATGTGGTGAGAACAGGTACATCTCCTCATCCTGCTTCGCGAGCT 3370213 Query 60127 GGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGT 60186 || |||| || |||| || || || ||||| || || || || ||||||||||||| Sbjct 3370212 CAAAGGTGATGTCCGGAATGACCACACCAAGGGACAGGGTTTTGATGCGGATCTTCTCGT 3370153 Query 60187 CGGCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAA 60245 ||||||||||||| || ||||| || || | ||| ||| || || ||||| || |||| | Sbjct 3370152 CGGCGTTTTCACGTTTCGTATCGAGAAAGCTCAA-GATATCCGGATGGTGGGCATTCAGA 3370094 Query 60246 TATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCT 60305 || || || |||||||| |||| || ||||| ||||| | ||||||||| || ||||| Sbjct 3370093 TAGACGGCACCTGCGCCTTGCCGAGCGCCCAGCTGGTTGGCGTAGGAGAAACTGTCTTCC 3370034 Query 60306 AGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCT 60365 || | |||||| || ||||| || ||||| | ||| ||| || || || |||||| Sbjct 3370033 AGGAGCTTCATTACCGGGATCACGCCAGACGACTGGTTTTCAATGCCTTTGATTGGAGCT 3369974 Query 60366 CCTGCCTCGCGGAGGTTGG--AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCT 60423 || || || || | ||||| || | ||| | | || || || || || || ||||||| Sbjct 3369973 CCGGCTTCACGAATGTTGGTCAGGA-GCAACG-CAACACCACCGCCTCGTTTCGACAGCT 3369916 Query 60424 G 60424 | Sbjct 3369915 G 3369915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225725986224080