Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 159 8e-34 seq1 156 9e-33 seq5 123 5e-23 seq6 107 4e-18 seq115 104 5e-17 seq623 100 6e-16 seq2 87.8 4e-12 >seq3 Length=4400433 Score = 159 bits (176), Expect = 8e-34 Identities = 411/617 (67%), Gaps = 18/617 (3%) Strand=Plus/Plus Query 68209 ATGGAGATCTGACCGATTCGTCTAGTTTGATTCATATAATC-ACCAAGATTCGTCCGGAC 68267 ||||||| || |||||| |||||| |||| | ||||| | ||| | | ||||| Sbjct 3198750 ATGGAGACCTCACCGATACGTCTAACTTGACGCGCTTAATCCAGGAAG-TGCAGCCGGAT 3198808 Query 68268 GAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGACAGTTTTAATCAAGCCGAGGTG 68327 || | |||||| ||| |||||| ||| | ||| ||| | | |||| Sbjct 3198809 GAGGTTTACAATCTGGGAGCACAAAGCCATGTGGCGGTCAGCTTTGAGTCACCCGAATAC 3198868 Query 68328 ACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGGT 68387 || ||| | |||||||| |||| |||| ||||| || || | || | | ||| Sbjct 3198869 ACCGCAGATGTAGATGCGATCGGCACCCTGCGATTACTCGAAGCGATCCGATTCTTGGGA 3198928 Query 68388 GTC------AACTCTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAA 68441 || || | ||| ||| ||| || ||| |||| || ||||| || ||| || Sbjct 3198929 CTCGAAAAGAAAACCCGATTTTACCAGGCCTCTACGTCTGAATTGTACGGTTTAGTTCAG 3198988 Query 68442 GAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAG 68501 |||| || ||| || | || || |||||||| ||||||| |||||||| || || Sbjct 3198989 GAAACACCGCAGCGCGAGACAACACCTTTTTATCCGAGAAGCCCATACGGTGTCGCGAAA 3199048 Query 68502 TTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCA 68559 | |||||||||||||| |||| || ||||| |||||||| ||||| | || | Sbjct 3199049 CTCTACGCTTATTGGATAACTGT--TAACTACCGCGAGTCGTACGGGATGTACGCCTGTA 3199106 Query 68560 ACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAA 68619 || ||| ||||||||||| || || | || | ||||||||||| || | Sbjct 3199107 ACGGTATTCTGTTCAATCACGAAAGCCCTCGTCGGGGTGAGACATTCGTGACTCGCAAGA 3199166 Query 68620 TCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATA 68679 ||||| | |||| ||||| | | || | || | ||| ||||||| || || | Sbjct 3199167 TCACGCGCGCACTCGCCAATATAGCCCAGGGGCTTGAGGAGTGCTTGTATCTGGGGAACA 3199226 Query 68680 TAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGT--AGAAGCAATGTGGTTGAT 68737 | ||||| |||||||||| |||| |||||||| || | |||| ||| |||| Sbjct 3199227 TGGATGCGTTGCGAGATTGGGGGCATGCTAAGGATTATGTTCGCATGCAA--TGGATGAT 3199284 Query 68738 GCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGC-GTTC 68796 |||||| ||||| |||| |||| || ||||| || || |||||| | | || Sbjct 3199285 GCTGCAGCAAGACGAGGCGGAAGACTTCGTAATTGCGAC-TGGCAAACAAATATCTGTGA 3199343 Query 68797 GTGAGTTCGTGAAAATG 68813 | || |||||||||||| Sbjct 3199344 GAGAATTCGTGAAAATG 3199360 >seq1 Length=7344524 Score = 156 bits (172), Expect = 9e-33 Identities = 344/516 (67%), Gaps = 0/516 (0%) Strand=Plus/Minus Query 149151 TCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTT 149210 ||||| || ||| | ||| || ||||| | || | ||||||||| ||||| | | Sbjct 6544350 TCATTGGGCCCGTATAAATTGGTAGGCATAGCCGAAATGAAATTACAATTGTATTGATCT 6544291 Query 149211 CTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTG 149270 | ||||| ||||| | || || ||||| ||||| || || ||||| || | || || Sbjct 6544290 CGATAAGCGTCACAAAGCTTAATCCCGGCAATTTTTGCGATGGCGTAAGGCTCATTGGTA 6544231 Query 149271 GGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGG 149330 ||||| || || || |||| || |||||| ||||| | || | | | || |||||| Sbjct 6544230 GGTTCCAGCAAGCCCGTCAGCAAATATTCCTCCTTTAAGGGCTGTGGTGCCAGCTTTGGG 6544171 Query 149331 TAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGA 149390 || ||||| || ||||||| || |||| ||||||| || | ||| |||| Sbjct 6544170 TAGATGCAGGATGACCCCAGAAACAATAGCTTTTCCACTCCGTGCACGTAAGACTGATGA 6544111 Query 149391 ATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTC 149450 || | || ||||||||||||| ||||||| | |||||| ||| | ||| || || Sbjct 6544110 ATCAAGTTATTCTGAATCATCAGGTTATCGTACAGAAAATCAGCCCGGTAGGTATTATTA 6544051 Query 149451 GCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCG 149510 || |||| ||||| || ||||| || || | ||| || || || || | ||| | Sbjct 6544050 GCCAGAATTCCTCCCACCTTTGCCGCAGCAACAAAAACATAGTCGGGGCGCTCGCGGCGG 6543991 Query 149511 AAAAACGCGTTCACTTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACG 149570 ||||| | || || || || ||||| |||||||| || ||| |||| Sbjct 6543990 AAAAAATCAGCTACCTCCACCTGCACCCGCAAATCGAGTTCTTTTGAGGTACGATAGACG 6543931 Query 149571 ATGTTCATATATCCTTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTG 149630 ||||| | | ||||| | || | | | | || |||| || |||||||| | Sbjct 6543930 ATGTTTGAAAAGCCTTCCGCCTCCAGGCGACGAACAATAGCGGAGCCCACCATTCCCCGG 6543871 Query 149631 TGACCTGCCACATATATCTTCGAGTGTTTTTCCATT 149666 || || || || || ||||| | || || |||||| Sbjct 6543870 TGGCCCGCTACGTAAATCTTGGCGTTCTTATCCATT 6543835 >seq5 Length=3486096 Score = 123 bits (136), Expect = 5e-23 Identities = 280/410 (68%), Gaps = 16/410 (4%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 |||||| || | |||||| | ||||| ||| || ||||| ||||| | ||| | || Sbjct 2522137 CCAAGCTTCCACCTCAGAGCTTTATGGTTTAGTTCAGGAAATCCCTCAAAGGGAGACCAC 2522078 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGT 68522 |||||||| || | ||||| | ||||||||| |||| || |||||||| |||| Sbjct 2522077 GCCGTTTTACCCAAGGTCGCCTTATGCGGTTGCAAAGATGTATGCCTATTGGATAGCTGT 2522018 Query 68523 AAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG 68582 || ||| || || | ||| |||||| | || || |||| || ||||||||| Sbjct 2522017 GAA--TTATCGCGAAGCTTATGGCATGTACGCTTGTAATGGTATTTTGTTTAATCACGAG 2521960 Query 68583 AGTCCCAACA--GAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATA 68640 |||| || | || | || || ||||||||||| || | | || |||| Sbjct 2521959 --TCCCCACGTCGCGGAGAAACTTTTGTCACTCGTAAAATTACCCGTGCCATAGCAAATA 2521902 Query 68641 TTT-TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGG 68699 || |||| ||| |||| ||| | |||||||| ||||| || || ||||||||| Sbjct 2521901 TTGCTCAA-GGTATCGAGCCTTGCCTTTATCTCGGAAATATGGACGCGCTCAGAGATTGG 2521843 Query 68700 GGATATGCGAAGGATTACGT--AGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGG 68757 || | || || ||||| || | ||| |||| ||||| |||| || |||| || | Sbjct 2521842 GGGCACGCAAAAGATTATGTGCGCATGCA--GTGGATGATGTTGCAGCAGGATAGCCCTG 2521785 Query 68758 ATGACTATGTGATTGCAACAGGGAAAACAACGAGC-GTTCGTGAGTTCGT 68806 | || | ||| ||||| || ||| |||||| | | ||||| || || || Sbjct 2521784 AAGATTTTGTTATTGCCAC-GGGCAAACAAATATCTGTTCGCGAATTTGT 2521736 >seq6 Length=3173221 Score = 107 bits (118), Expect = 4e-18 Identities = 251/377 (67%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 || |||||| | |||||| | || || ||||| |||| || |||| |||| || Sbjct 1998380 CAGGCGTCTACATCAGAGCTCTACGGGCTGGTGCAGGAAACCCCGCAGAAAGAAACAACG 1998439 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || || ||||||| || || | || || ||| | ||||| || |||||| | Sbjct 1998440 CCTTTCCATCCTCGCTCACCCTATGCAGTGGCCAAGCTTTACGCCTACTGGATCGCCGTA 1998499 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 |||||||| ||| | || ||||||| ||||| ||| | ||||||||||| Sbjct 1998500 AATTACCGCGAGGCCTACGGGATGTATGCCTGCAATGGGATATTGTTCAATCACGAATCG 1998559 Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645 |||| | || | ||||| || || || ||||| || | |||| ||||| Sbjct 1998560 CCCAGGCGCGGTGAAACCTTCGTTACGCGAAAGATCACCCGGGGGCTCGCCAATATCGCA 1998619 Query 68646 AATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATAT 68705 | || | ||| || ||||| | || || || |||||| || |||||||| || Sbjct 1998620 CAGGGCCTGGAATCTTGTTTGTATATGGGCAACATGGATGCCCTGAGGGATTGGGGGCAT 1998679 Query 68706 GCGAAGGATTACGTA--GAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 68763 ||||| || || ||| | ||| |||| | ||||| || || ||| ||||| |||| Sbjct 1998680 GCGAAAGACTATGTACGTATGCA--GTGGCTAATGCTTCAGCAGGATCAACCGGAAGACT 1998737 Query 68764 ATGTGATTGCAACAGGG 68780 ||||||||| || ||| Sbjct 1998738 TTGTGATTGCCACGGGG 1998754 >seq115 Length=378902 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | || ||| | ||||||||||||||| |||||||| | Sbjct 238923 GCTGATCGGCATGAACAGCGCGCTGATGCGGCAGTACATCGAATTCTGCGCCGACCGGCT 238982 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | || | ||| || | |||||| ||||||||| ||||||||| | || ||||| Sbjct 238983 GCTGATGGAGCTCGGCTGTGAGAAGAAGTACAACTCGGCGAACCCCTTCGACTGGATGGA 239042 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || ||||| ||||| || || ||||||||||| || || || Sbjct 239043 GATGATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAACGGGT 239087 >seq623 Length=26265 Score = 100 bits (110), Expect = 6e-16 Identities = 255/384 (66%), Gaps = 8/384 (2%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || |||| ||| | || ||||| || || ||| |||| ||| |||||| || Sbjct 8796 CCAGGCCTCCACGTCTGAGCTCTACGGAAAGGTACAGGAAGTTCCGCAGTCGGAAACCAC 8737 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 ||| || ||||| |||||||||| | | |||||| | ||||| ||||||||| Sbjct 8736 TCCTTTCTATCCAAGAAGCCCTTATGCCGCGGCAAAGCTCTACGCCTATTGGATCGTCGT 8677 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || |||||||| | || |||| | | ||||| || ||||||||||| || Sbjct 8676 CAACTACCGTGAAGCCTACGGCATGCACGCCAGCAACGGCATCCTCTTCAATCACGAAAG 8617 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 || | | | ||| | |||||||| || || ||||| | | ||| | | Sbjct 8616 CCCGATCCGCGGCGAAACCTTCGTGACCCGCAAGATCACCCGCGCCGCCGCCGCGA---T 8560 Query 68645 CAA--TGG--TGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 68700 ||| ||| || | | || | || || ||||| | || ||| || | || |||| Sbjct 8559 CAAACTGGGCCTTCAGGACAAGC-TCTACCTTGGTAACCTGGACGCCGAACGTGACTGGG 8501 Query 68701 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 68760 | |||| || || ||||| | |||||| |||||||||| || || | |||||| Sbjct 8500 GGCATGCAAAAGACTACGTCCGCGGCATGTGGCTGATGCTGCAGCAGGACAAGGCGGATG 8441 Query 68761 ACTATGTGATTGCAACAGGGAAAA 68784 | ||||| | || || ||| ||| Sbjct 8440 ATTATGTTCTGGCGACTGGGGAAA 8417 >seq2 Length=6328565 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68670 CTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATG 68729 ||||| || | ||||| ||| | ||||||||| |||| | ||||| || ||||| ||| Sbjct 820879 CTCGGAAACCTCGATGCGAAACGCGATTGGGGACATGCTCAAGATTATGTTGAAGCCATG 820938 Query 68730 TGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAAC 68785 ||| | ||| | || ||||| |||||||||||||| || | ||||| || |||| Sbjct 820939 TGGCTCATGTTACAGCAAGAAACTCCGGATGACTACGTCGTAGCAACTGGCGAAAC 820994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102869656364200