Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2 100 4e-16 seq1 89.7 8e-13 seq3 84.2 3e-11 >seq2 Length=6328565 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 186528 ATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAAC 186587 |||||| |||||||||||||||||||||||||||||| |||| || ||||||||| || Sbjct 1778113 ATGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCCTCGTCCCGAACGAGGTGCGCT-AC 1778171 Query 186588 CAGACTGCGCTACACTC 186604 ||| ||||||||||||| Sbjct 1778172 CAGGCTGCGCTACACTC 1778188 >seq1 Length=7344524 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 186531 GTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACCAG 186590 ||| | ||| ||||||||||||| || ||||||| ||||||| |||||||||||||| | Sbjct 7232152 GTCGGGGTGGCAGGATTCGAACCTGCGGCCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 7232211 Query 186591 ACTGCGCTACAC 186602 |||||||||||| Sbjct 7232212 ACTGCGCTACAC 7232223 >seq3 Length=4400433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| ||| || ||||||||||||| |||||| ||| ||||||| ||| |||||| ||| Sbjct 3749080 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCT-ACC 3749138 Query 186589 AGACTGCGCTACACTC 186604 ||||||||| || ||| Sbjct 3749139 AGACTGCGCCACGCTC 3749154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739881230024800