Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq244 425 6e-114 seq2 322 5e-83 seq3 93.3 4e-14 seq318 87.8 2e-12 >seq244 Length=185980 Score = 425 bits (470), Expect = 6e-114 Identities = 668/949 (70%), Gaps = 17/949 (2%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 || |||||||||||||| || ||||| || || |||| | |||||||| ||||| Sbjct 84955 GCAATCAACTGGAACCGGCTGCAGGACGACAAAGATCTGGAGATCTGGAACCGTCTGACG 85014 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054 ||||||||| |||||||||| | ||| |||||||||| | ||||| ||| ||| Sbjct 85015 GTAAACTTCTGGTTGCCGGAGAAAGTGCCGCTGTCCAATGATATTCAGTCTTGGTCACAG 85074 Query 156055 CTGACC---GAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTG 156111 |||||| || ||| || ||||| |||| ||||||||||||||||||||| | || Sbjct 85075 CTGACCCCGGACGAACAGACCCTGA---CCATTCGGGTGTTCACCGGCCTGACGCTACTC 85131 Query 156112 GACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCAC 156171 ||||| |||||| |||| || ||| |||| || | ||| || ||||||||||| Sbjct 85132 GACACGATCCAGAATGCCGTGGGTGCGCCGACGCTGATGCAGGATGCGATCACCCCGCAT 85191 Query 156172 GAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCG 156231 || ||||||||| | ||| ||||| || |||||| ||||| || || ||| || Sbjct 85192 GAAGAGGCGGTGCTTAGCAATATCGCCTTTATGGAGGCGGTGCATGCGCGGTCCTATTCC 85251 Query 156232 AACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAG 156291 | |||||||| ||||| |||| ||| | || | || ||||||||||||| | Sbjct 85252 TCGGTGTTCTCGACCCTGTGTCAAACCACTGAGGTGGATGAAGCCTTCCGCTGGTCGGCG 85311 Query 156292 GAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGAC 156351 ||||| | | |||||| || | | | | || | | ||| | | || | Sbjct 85312 GAGAATGAGCATCTGCAGGCCAAATCCCGGCTGATCCTTGACGAATACGATGCCACCGCC 85371 Query 156352 CCGCTCAAGCGCAAGG---TCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 ||| ||||||| ||||| | | | || ||| ||||| ||||||| ||| Sbjct 85372 TCGCCGCTGCGCAAGAAGATCGCCAGCGTGTTCCTTGAGAGCTTCTTGTTCTATTCGGGC 85431 Query 156409 TTCTACCTGCCGATGTTCTGGTC--GTCGCGAG-GCAAGCTCACCAACACCGCCGACATG 156465 || || ||||| ||| |||||| | |||| | || || |||||||| |||||| || Sbjct 85432 TTTTATCTGCCAATGCACTGGTCAAGCCGCGCGCGC---CTGACCAACACTGCCGACCTG 85488 Query 156466 ATCCGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAG 156525 ||||| || |||||||| || || ||| | |||||||| ||||||||||| ||||||||| Sbjct 85489 ATCCGCCTGATCATCCGCGATGAAGCCATCCACGGCTATTACATCGGCTATAAGTTCCAG 85548 Query 156526 AAGGGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAG 156585 ||| ||||| || | |||| | ||||||| ||||| | ||| || Sbjct 85549 CGCGGCATGGAGCGTTTGAACGAGGCGGAACGCAAGGAACTGAAGGATTTTGCCTTTGGT 85608 Query 156586 CTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACC 156645 ||||||| || || | |||| ||| | || || || | ||||| || | Sbjct 85609 TTGCTGTTTGACCTTTATGACATTGAGGCGCGCTATACAGAGCAGCTCTATGATGGGTTG 85668 Query 156646 GGCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAAC 156705 || | || ||||| |||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct 85669 GGGCTCACTGAGGATGTGAAGAACTTCCTGCACTACAACGCCAACAAGGCCCTGCAGAAC 85728 Query 156706 CTGGGCTACGACGCGCTGTTCAGCCGCAGCGA-CTGCGACGTCAACCCGGCCATCCTGAG 156764 || || | || |||||||| | | || || |||| || |||||||| ||| || Sbjct 85729 CTCGGATTTGAGGCGCTGTT-TCCGGAAGAGACCTGCCGTGTGAACCCGGCGATCATGGC 85787 Query 156765 CGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTA 156824 |||||||||||||| || || ||||||||||||||||| || || ||| | || Sbjct 85788 GGCGCTGTCGCCCGGATCGGATGAAAACCACGACTTCTTCTCCGGTTCCGGCTCAAGCTA 85847 Query 156825 CGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 || || | ||||| | | ||| |||||||| |||||||| |||||| Sbjct 85848 TGTGATCGGCAAGGCAGAAGCCACAGAAGACGAAGACTGGGATTTCTGA 85896 >seq2 Length=6328565 Score = 322 bits (356), Expect = 5e-83 Identities = 647/945 (68%), Gaps = 17/945 (2%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 ||| ||||||||||||| | ||||| ||||| ||| | |||||||| ||||| Sbjct 3371524 GCCGTCAACTGGAACCGACTTCAGGACGACAAGGATCTGGAAATCTGGAACCGCCTGACT 3371583 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCC--AGTCGTGGCACC 156052 ||| |||||||| ||||| || | || |||| |||||| | | ||| | | || Sbjct 3371584 GTCAATTTCTGGCTCCCGGAAAAAGTTCCCCTGTCGAATGACATTCAAAGTTGGGCGAC- 3371642 Query 156053 AGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGG 156112 |||| || ||| ||||| | | || || || || || ||||| |||| | |||| Sbjct 3371643 -GCTGCACGCGGATGAGCGGCAACTGACAATCCGCGTCTTTACCGGATTGACACTTCTGG 3371701 Query 156113 ACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACG 156172 ||||||| || || ||||| || || | || | ||||| | || ||||| | Sbjct 3371702 ACACCATTCAAAATACGGTCGGTGCTCCAGCGTTGATGACAGACGCGCTGACGCCGCATG 3371761 Query 156173 AGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGC-GTGCACGCACGCAGCTACTCG 156231 | ||||| || |||||||| ||||||||||| ||| || || ||||||||||| || Sbjct 3371762 AAGAGGCAGTTCTAACCAACATAGCGTTCATGGA-AGCTGTCCATGCACGCAGCTATTCT 3371820 Query 156232 AACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAG 156291 | |||||||||| || ||| || ||| | |||| |||||||||||||||||| Sbjct 3371821 TCCGTCTTCTCGACACTCTGCCAGACGTCCGAGGTTGACGATGCGTTCCGCTGGTCGGAG 3371880 Query 156292 GAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTG--ACG 156349 ||||| | || ||| || | || | | || | | | || ||| || | Sbjct 3371881 GAGAATGAGTTTCTTCAGGCAAAATCACAGCTGATTCTGAACGAATATGACGCTGCTTCT 3371940 Query 156350 AC-CCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 | ||| | ||| ||||||||| | | || ||| | || ||||||||| ||| Sbjct 3371941 TCACCGTTGAAGAAGAAGGTCGCCAGCGTCTTTCTTGAGAGTTTTCTGTTCTACTCGGGC 3372000 Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468 ||||| ||||| ||| ||||| || | |||||||||||||| || || ||||| Sbjct 3372001 TTCTATCTGCCCATGCATTGGTCCAGCCGTGCAAAGCTCACCAACACTGCGGATCTGATC 3372060 Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528 || || ||||| || || || || ||||| |||||||| ||||| |||||||| ||| | Sbjct 3372061 CGCCTGATCATTCGCGATGAAGCGGTGCATGGCTACTATATCGGTTACAAGTTTCAGCGG 3372120 Query 156529 GGCCTGGAGAAG-GAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCT 156587 ||||||| | | | ||| || | | || ||||||| | | | || || Sbjct 3372121 ATGCTGGAGACGCTTGGCGAAGCGGAGCGTG-ACGAGATCAAGGATTTTGCATTTGCTCT 3372179 Query 156588 GCTGTTCGAGCTGTTCGACAACGAGCAGGAG-TACACCCAGGACCTCTACGACGCCACCG 156646 ||||||| || | ||||| ||| || | || ||| | ||||||||| | | Sbjct 3372180 AATGTTCGACCTTTACGACATAGAG-AGCCGATATACCGAAAGCCTCTACGATCGCGTAG 3372238 Query 156647 GCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACC 156706 ||| ||||| ||||||||| | ||||||| ||||||| |||||||| || ||| | Sbjct 3372239 GCCTTACCGAAGACGTGAAGCATTTCCTGCACTACAACGCGAACAAGGCATTGATGAATC 3372298 Query 156707 TGGGCTACGACGCGCTGTTCAGCCG--CAGCGACTGCGACGTCAACCCGGCCATCCTGAG 156764 | |||||||| || || || ||| ||| | |||| | || ||||| || ||| || Sbjct 3372299 TTGGCTACGAGGCCCTTTT--TCCGGACAGTGTCTGCCAGGTAAACCCCGCAATCATGGC 3372356 Query 156765 CGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTA 156824 |||||| || ||| || ||| ||||| || ||||| || || || || ||| | || Sbjct 3372357 CGCGCTTTCTCCCAATGCAGATGAGAATCATGACTTTTTTTCAGGATCCGGCTCGTCTTA 3372416 Query 156825 CGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTT 156869 || || | ||||| || | |||||||||| |||||||| || Sbjct 3372417 TGTTATCGGCAAGGCGGTCGCGACCGAAGACGTAGACTGGGATTT 3372461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| || ||||||||| Sbjct 30537 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 30596 Query 92675 CCCACTCCCGCCAC 92688 || ||||||| || Sbjct 30597 CCTGCTCCCGCAAC 30610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| || ||||||||| Sbjct 5614567 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 5614508 Query 92675 CCCACTCCCGCCAC 92688 || ||||||| || Sbjct 5614507 CCTGCTCCCGCAAC 5614494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| || ||||||||| Sbjct 6278198 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 6278257 Query 92675 CCCACTCCCGCCAC 92688 || ||||||| || Sbjct 6278258 CCTGCTCCCGCAAC 6278271 >seq3 Length=4400433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 2145909 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 2145968 Query 92675 CCCACTCCCGC 92685 || |||||||| Sbjct 2145969 CCTACTCCCGC 2145979 >seq318 Length=132058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| ||| ||||||||| Sbjct 19272 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCGTAGGTTCAAAT 19213 Query 92675 CCCACTCCCGC 92685 || ||||||| Sbjct 19212 CCTGCTCCCGC 19202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526593581624640