Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq36 104 2e-17 seq115 95.1 1e-14 seq53 95.1 1e-14 seq63 87.8 2e-12 >seq36 Length=729648 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 || |||| || |||||||||||||||| ||| || |||||| || || || |||| | Sbjct 220069 ACACCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAA 220010 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| |||||||| |||||||| || || || || ||||| ||||||||| || | Sbjct 220009 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGC 219950 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | ||||| | | ||| || || | || | || || || || ||||| || | Sbjct 219949 CGTCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 219890 Query 138602 CAAAAATCTG 138611 | |||||||| Sbjct 219889 CGAAAATCTG 219880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| || | ||| | || | | ||||| || || ||||||||||||||| Sbjct 222049 CCGCCGCGCAGGCGAAGAACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 221990 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || |||| |||| |||||||| || || || || Sbjct 221989 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGGG 221930 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || || | || | ||||| | | |||||| Sbjct 221929 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 221870 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || || || || || || || ||||||||| Sbjct 221869 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 221822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| || || |||||| || || || |||| | ||| Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| || || || || || || || ||||| ||| || || || | | Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220909 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||| | | |||||| || | || | || || || || || || || || | Sbjct 220908 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220849 Query 138605 AAATCTGCATG 138615 | ||||||||| Sbjct 220848 AGATCTGCATG 220838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| || || |||||| || || || |||| | ||| Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| || || || || || || || ||||| ||| || || || | | Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 221401 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||| | | |||||| || | || | || || || || || || || || | Sbjct 221400 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 221341 Query 138605 AAATCTGCATG 138615 | ||||||||| Sbjct 221340 AGATCTGCATG 221330 >seq115 Length=378902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCC 52688 || ||||||| | ||| ||||| |||| ||||||||| | ||||||||| |||| | Sbjct 238889 AACAGGAGTTCATCACGTCCGCGTTGCCCGTCGAGCTGATCGGCATGAACAGCGCGCTG- 238947 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AA 52747 ||| | |||||||||| || || || || ||| || || ||||||| | | | || Sbjct 238948 ATGCGGCAGTACATCGAATTCTGCGCCGACCGGCTGCTGATGGAGCTCGG-CTGTGAGAA 239006 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 | | | |||| | || || || || | ||| | | || ||||| | |||||||| Sbjct 239007 GAAGTACAACTCGGCGAACCCCTTCGACTGGATGGAGATGATCTCGCTCCAAGGCAAGAC 239066 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| |||||||| || || || ||||| Sbjct 239067 CAACTTCTTCGAGAAACGGGTTGGGGAGTA 239096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 215/325 (66%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 52229 CATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTGA-TAAAAGATG 52287 ||||||| | | |||| ||| |||||| |||||| || || || || | || || | Sbjct 238144 CATCGAGAACATCCACAGCGAGGTGTACAGTCTGCTGATCGA-CACCTACGTCAAGGACG 238202 Query 52288 AGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGG 52347 | |||| | | ||| | || || | ||| |||||| ||||| || | |||| Sbjct 238203 CGTCCGAGAAGGCCCACCTGTTCAACGCCATGGAGACCGTGCCTTGCGTGCGAAGGAAGG 238262 Query 52348 CTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGG 52407 | |||||| || |||| | | ||| || | | || ||||| | || | Sbjct 238263 CGAGGTGGGCGCTGCGGTGGTGCAACCCGGACCTGGCGTCCTTCGCGGAGCGGCTCGTTG 238322 Query 52408 CCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTA 52467 | ||||| || |||||| | || || ||||||||||| |||| |||| | | | Sbjct 238323 CGTTCGCGGCCGTGGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCGTCTTCTGGCTCA 238382 Query 52468 AAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAG 52527 ||| | ||| | |||||||||||| ||| |||||| | || |||||||| | Sbjct 238383 AAAAGCGCGGCCTGATGCCCGGCCTGTGCTTCTCGAACGAGCTCATCAGCCGCGACGAGG 238442 Query 52528 GACTGCACACGGACTTTGCGTGCCT 52552 | |||||||| ||||| || ||||| Sbjct 238443 GCCTGCACACCGACTTCGCTTGCCT 238467 >seq53 Length=625924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || |||||| || || || |||| Sbjct 124746 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 124805 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || || | Sbjct 124806 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 124865 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||| | | |||||| |||| ||| | || || || || || || || Sbjct 124866 CCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTG 124925 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 124926 ACGAAGATCTGCATG 124940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || |||||| || || || |||| Sbjct 124974 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 125033 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || || | Sbjct 125034 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 125093 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||| | | |||||| |||| ||| | || || || || || || || Sbjct 125094 CCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTG 125153 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 125154 ACGAAGATCTGCATG 125168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || |||||| || || || |||| Sbjct 125202 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 125261 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || || | Sbjct 125262 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 125321 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||| | | |||||| |||| ||| | || || || || || || || Sbjct 125322 CCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTG 125381 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 125382 ACGAAGATCTGCATG 125396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || |||||| || || || |||| Sbjct 125430 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 125489 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || || | Sbjct 125490 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 125549 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||| | | |||||| |||| ||| | || || || || || || || Sbjct 125550 CCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTG 125609 Query 138601 ACAAAAATCTGCATG 138615 || || || |||||| Sbjct 125610 ACGAAGATTTGCATG 125624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||| | || || |||||| || || || |||| ||| Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | || ||||| |||||||| || || || || ||||| ||| || || || | | Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 126212 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||| | | |||||| |||| ||| | || || || || || || || || | Sbjct 126213 CGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGA 126272 Query 138605 AAATCTGC 138612 |||||||| Sbjct 126273 AAATCTGC 126280 >seq63 Length=566113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| || ||||||||||||| || || |||||| || || || |||| ||| Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | || ||||| |||||||| || || || || ||||| ||| || || || | | Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||| | | |||||| || | || | || || || || ||||| || |||| Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 138605 AAATCTGC 138612 | |||||| Sbjct 329621 AGATCTGC 329628 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || || | Sbjct 328854 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCG 328913 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || | || | Sbjct 328914 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGGCTTCACG 328973 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||||| | || || || | ||| | || || || || || || || Sbjct 328974 CCGTCGATCGTGTCGGAGGGTTCTACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTG 329033 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 329034 ACGAAGATCTGCATG 329048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257859199040