Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq63 120 3e-22 seq53 118 1e-21 seq36 114 1e-20 seq1 98.7 9e-16 >seq63 Length=566113 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| |||||||| |||| || ||||| || || ||||| ||||| ||| ||||| Sbjct 329443 TTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATC 329502 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 329503 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGTCG 329562 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || || | ||| || || ||||| || ||||| || ||||| Sbjct 329563 ATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAAAG 329622 Query 127106 ATCTGC 127111 |||||| Sbjct 329623 ATCTGC 329628 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| || || ||||| |||||| Sbjct 328851 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCA 328910 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 328911 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGGCTTC 328970 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | |||| ||||| | || || || | || | || || || || || || Sbjct 328971 ACGCCGTCGATCGTGTCGGAGGGTTCTACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTC 329030 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 329031 TTGACGAAGATCTGCATG 329048 >seq53 Length=625924 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || ||| | || | ||| ||||| || || || ||||| |||| Sbjct 124941 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125000 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 125001 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125060 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | |||| ||||||| ||| || Sbjct 125061 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125120 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || || || || || || ||||||||| Sbjct 125121 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || ||| | || | ||| ||||| || || || ||||| |||| Sbjct 125169 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125228 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 125229 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125288 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | |||| ||||||| ||| || Sbjct 125289 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125348 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || || || || || || ||||||||| Sbjct 125349 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || ||| | || | ||| ||||| || || || ||||| |||| Sbjct 125397 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125456 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 125457 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125516 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | |||| ||||||| ||| || Sbjct 125517 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125576 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || || || || || || || |||||| Sbjct 125577 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | | || ||| | || | ||| ||||| || || || ||||| |||| Sbjct 124713 CCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 124772 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 124773 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 124832 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | |||| ||||||| ||| || Sbjct 124833 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 124892 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || || || || || || ||||||||| Sbjct 124893 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| | ||||| || || ||||| || || ||| ||||| Sbjct 126095 TTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 126154 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| |||||||| | ||| Sbjct 126155 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 126214 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || |||| || | || ||||| || || || || || ||| Sbjct 126215 ATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAA 126274 Query 127106 ATCTGC 127111 |||||| Sbjct 126275 ATCTGC 126280 >seq36 Length=729648 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| ||| ||||| | || | || | || | || |||||||| || || || Sbjct 222058 CTCTACTG-TCCGCCGCGCAGGCGAAGAACAAGGTGGAGAGTCGACTCTTTCTGGATGTT 222000 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| |||| || ||||| || || ||||| || || ||| |||||| |||||||| Sbjct 221999 GTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 221940 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGT 127056 ||| || || || |||||||||||| ||| |||||||| | |||| ||||||| Sbjct 221939 ATCAGGCGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGA 221880 Query 127057 ACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || || | ||| | || ||||| || || || || || || ||||||||| Sbjct 221879 GGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 221822 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| || || ||||| || || ||| ||||| Sbjct 220537 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 220478 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||||||| ||| |||||||| | ||| Sbjct 220477 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 220418 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || || | ||| | || ||||| || || || || || || Sbjct 220417 ATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 220358 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 220357 ATCTGCATG 220349 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| || || ||||| || || || ||||| Sbjct 220064 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 220005 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||| ||||| | ||| Sbjct 220004 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGCCGTCG 219945 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| || ||||| || || ||| Sbjct 219944 ATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAA 219885 Query 127106 ATCTG 127110 ||||| Sbjct 219884 ATCTG 219880 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| || || ||||| || || || ||||| Sbjct 221026 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 220967 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||||||| ||| |||||||| | ||| Sbjct 220966 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 220907 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || || | ||| | || ||||| || || || || || || Sbjct 220906 ATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 220847 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 220846 ATCTGCATG 220838 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| || || ||||| || || || ||||| Sbjct 221518 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 221459 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||||||| ||| |||||||| | ||| Sbjct 221458 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 221399 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || || | ||| | || ||||| || || || || || || Sbjct 221398 ATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 221339 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 221338 ATCTGCATG 221330 >seq1 Length=7344524 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 47350 TTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAG 47409 ||||| | ||||| | ||||| | ||| ||| | | || || || |||| | | Sbjct 2684125 TTGCCAATGCCGTAGAAATTGAAAAGGAATTTGTAACGGATGCCCTCCCCGTAGGACTGA 2684184 Query 47410 TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCG 47469 | || ||||| || || ||||| | |||||||||| ||||| |||||||||||||| | Sbjct 2684185 TTGGTATGAATGCCGACCTGATGTGCCAGTACATCGAGTTTGTAGCCGACCGCCTGCTGG 2684244 Query 47470 TTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| ||| | ||||| | | || ||||| |||||| | ||| || | Sbjct 2684245 TAGCGCTGAAGCACGATAAGATCTTCAACGTAGAGAACCCATTCCCATGGATGGACCTGA 2684304 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || | || || || |||||||| ||||| |||||||| ||||| || Sbjct 2684305 TCTCTTTGGAAGGTAAAACCAACTTCTTCGAAAAGCGCGTGGGCGACTA 2684353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496449167680