Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq493 141 3e-29 >seq493 Length=52014 Score = 141 bits (156), Expect = 3e-29 Identities = 98/111 (88%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 24977 ttttGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTTCTC 25036 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||||||| Sbjct 48134 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 48193 Query 25037 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCCAGCTCATCCAGCAG 25087 |||||||||| |||||||||||||||| ||| | ||| | ||||||||||| Sbjct 48194 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 48244 Score = 141 bits (156), Expect = 3e-29 Identities = 98/111 (88%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 24977 ttttGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTTCTC 25036 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||||||| Sbjct 50914 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 50973 Query 25037 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCCAGCTCATCCAGCAG 25087 |||||||||| |||||||||||||||| ||| | ||| | ||||||||||| Sbjct 50974 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 51024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137528404523952