Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq53 109 5e-19 seq63 91.5 1e-13 seq337 84.2 2e-11 >seq53 Length=625924 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || |||| ||| || || ||||| || ||||| ||||| || || ||| Sbjct 125394 ATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 125453 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 125454 CTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 125513 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || || || | | || | ||||| || | ||| Sbjct 125514 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCC 125573 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || |||||||| Sbjct 125574 ACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 125623 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| ||||||| ||| || || ||||| || ||||| ||||| || || |||||| Sbjct 124713 CCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 124772 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || || || ||| | |||| || ||||||||||| || Sbjct 124773 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 124832 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || || || || || | | || | ||||| || | ||| || Sbjct 124833 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 124892 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || || || || || || ||||| Sbjct 124893 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124939 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || |||| ||| || || ||||| || ||||| ||||| || || ||| Sbjct 124938 ATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 124997 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 124998 CTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 125057 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || || || | | || | ||||| || | ||| Sbjct 125058 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCC 125117 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || || ||||| Sbjct 125118 ACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 125167 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || |||| ||| || || ||||| || ||||| ||||| || || ||| Sbjct 125166 ATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 125225 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 125226 CTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 125285 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || || || | | || | ||||| || | ||| Sbjct 125286 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCC 125345 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || || ||||| Sbjct 125346 ACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 125395 >seq63 Length=566113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 ||||||||||||| || ||||| | ||| || |||| || ||||| ||| | | Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 ||| || ||||||||||| || ||||| || || || || || || || || | | | Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||| || | ||| || || || || || || ||||| || ||||| || |||| Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 45331 AAATTTGC 45338 | || ||| Sbjct 329621 AGATCTGC 329628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||||| ||| || || || || || ||||| ||||| || || ||| Sbjct 328818 ATGCCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 328877 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| || |||| || ||||| ||| | |||| || ||||||||||| Sbjct 328878 CTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGG 328937 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || | || | | || | |||||||| | || Sbjct 328938 GGGATGCCCTCCTTGTCCTGGATCTTCGGCTTCACGCCGTCGATCGTGTCGGAGGGTTCT 328997 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || || || || || || ||||| Sbjct 328998 ACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 329047 >seq337 Length=117279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGACGCGACATCGAAAACGCGA 122973 || || ||| |||||||||| | | ||| | ||| ||||| ||||||| || | || Sbjct 20271 CAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGACG--ACATCGACAAGGTGA 20328 Query 122974 CCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCG 123033 ||| || ||||| | ||||| || | | ||||||||||| | || || ||||| Sbjct 20329 TCGAGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCAACACCGACGCTGTTCA 20388 Query 123034 CCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACA 123093 |||||||||| ||| ||| |||| || || |||||||| || || |||| Sbjct 20389 ACGCCGGCACGCCCAAGCCGCAGATGTCCAGCTGCTTCCTGCTCACCATGAAGGAGGACA 20448 Query 123094 GCATCACCGGTATCTATGAAAC 123115 |||||| ||| || || || || Sbjct 20449 GCATCAACGGGATATACGACAC 20470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999064170720