Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_012696.1 Length=73325 Score E Sequences producing significant alignments: (Bits) Value seq273 311 4e-80 >seq273 Length=166498 Score = 311 bits (344), Expect = 4e-80 Identities = 494/706 (70%), Gaps = 2/706 (0%) Strand=Plus/Minus Query 25039 GGAAGCTCGCTTCTACAATGCCCTGTATGATTTCAAGTTCCTACGTGCTGGTAGGATCAA 25098 ||||| || ||||| || ||| | |||||| ||||||| | || || |||||| Sbjct 147118 GGAAGAGCGGTTCTATGGCGCGCTGGAGGATTTCCAGTTCCTGCCCGCAGGGCGGATCAC 147059 Query 25099 CTCCGGTGCAGGAACAGGCCGGAATGTGACTCTCTTCAACTGCTACGTCATGGGAACTAT 25158 | | || || || || | || || ||||| || |||||||| | ||||||||| || || Sbjct 147058 CGCAGGGGCCGGCACCGCGCGCAAGGTGACGCTGTTCAACTGTTTCGTCATGGGCACGAT 146999 Query 25159 CCCTGACAGCCTTGATGGTATCTTTGATATGCTCAAGGAAGCTGCACTCACCATGCAGCA 25218 ||| |||| | | | || || || || ||||| || || || || || ||||||||||| Sbjct 146998 CCCCGACAACATGGGCGGCATTTTCGACATGCTGAAAGAGGCCGCGCTGACCATGCAGCA 146939 Query 25219 AGGCGGTGGAATTGGTTATGACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTACGAGG 25278 ||||| || || || ||||| ||||| ||| | || ||||| ||||| ||| || Sbjct 146938 GGGCGGCGGCATCGGCTATGATTTCTCGACCATCCGGCCCAAGGGTGCGGATGTGAAGGG 146879 Query 25279 CGTGGAGAGCTTCT-CCAGCGGTCCTCTCACCTTCATGGATGTCTGGGACTCCATGTGCA 25337 ||||| | || | || || || || |||||||||||||||||||| | ||||| Sbjct 146878 CGTGGCG-GCGGATGCCTCGGGCCCGCTGTCCTTCATGGATGTCTGGGACGCGATGTGTC 146820 Query 25338 AAACTATCATGTCTGCTGGCTCACGACGTGGAGCTATGATGGCCACAATGCGTTGTGATC 25397 || |||||||| || ||||| || || || || |||||||| || ||||| || |||| Sbjct 146819 GCACGATCATGTCCGCAGGCTCGCGCCGGGGCGCGATGATGGCGACCATGCGCTGCGATC 146760 Query 25398 ATCCTGACATCATGGACTTTGTTACTGCCAAGCAAGATCCTCTGCGACTTCGGAACTTCA 25457 | || ||| | | | || | | |||||| ||||| || || || | |||| Sbjct 146759 ACCCGGACGTGGAGCAATTCATCGCCGCCAAGTCCGATCCGGCCCGGCTGCGCATGTTCA 146700 Query 25458 ACGTGTCAGTTCTCTGTACCGATGAGTTCATGGAAGCAGTTTCTGCTGACAGTGATTGGG 25517 || |||| || || ||||| |||||||| || || || ||| | |||| Sbjct 146699 ACATGTCTGTCCTGGTCACCGACCCTTTCATGGAGGCCGTGAAGGCCGACGGGTCCTGGG 146640 Query 25518 ATCTCGTATTTGATGGCAAGGTCTATCAGACCATCAAAGCCAAAGAACTCTGGGATGCCA 25577 | || || ||||| |||||||||||||| || | | || || || ||| | || Sbjct 146639 ACCTGGTCTTTGACGGCAAGGTCTATCACACGCTTCAGGCGCGCGATCTGTGGAACCGCA 146580 Query 25578 TTCTGTGGAACACTTACAACTACGCTGAACCCGGTGTAATCTTCATTGATCGCATCAACA 25637 | || | || || | ||||| || || ||||| |||||||| || ||||||||| Sbjct 146579 TCATGCAGGCGACCTATGATTACGCCGAGCCGGGTGTGATCTTCATCGACCGCATCAACC 146520 Query 25638 AGGAAAACAACCTTTGGTTTCTTGAAACCATTGCAGCAACGAATCCCTGTGGTGAGCAGC 25697 ||| |||||||| | | | ||||||||||| || || || ||||| || || |||| Sbjct 146519 AGGCCAACAACCTGAGCTATTGCGAAACCATTGCCGCGACCAACCCCTGCGGGGAACAGC 146460 Query 25698 CTTTGCCTCCATATGGAGCTTGCCTTCTTGGTTCAGTCAATCTGGC 25743 | |||| || ||||| || |||||||| || || ||||| |||| Sbjct 146459 CGCTGCCGCCCTATGGGGCCTGCCTTCTGGGCTCGGTCAACTTGGC 146414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234513107831272