Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_012697.1 Length=74611 Score E Sequences producing significant alignments: (Bits) Value seq273 277 9e-70 seq1 84.2 1e-11 >seq273 Length=166498 Score = 277 bits (306), Expect = 9e-70 Identities = 475/687 (69%), Gaps = 2/687 (0%) Strand=Plus/Minus Query 26452 GCTCTGTATGATTTCAAGTTCCTACCTGCTGGTAGGATCAACTCCGGTGCTGGAACAGGC 26511 || ||| | |||||| ||||||| || || || |||||| | | || || || || | Sbjct 147099 GCGCTGGAGGATTTCCAGTTCCTGCCCGCAGGGCGGATCACCGCAGGGGCCGGCACCGCG 147040 Query 26512 CGGAACGTGACTCTCTTCAACTGCTACGTCATGGGTACTATCCCTGACAGCCTTGATGGT 26571 || || ||||| || |||||||| | ||||||||| || ||||| |||| | | | || Sbjct 147039 CGCAAGGTGACGCTGTTCAACTGTTTCGTCATGGGCACGATCCCCGACAACATGGGCGGC 146980 Query 26572 ATCTTCGATATGCTCAAGGAAGCTGCACTTACCATGCAGCAAGGTGGTGGAATCGGTTAC 26631 || ||||| ||||| || || || || || ||||||||||| || || || ||||| || Sbjct 146979 ATTTTCGACATGCTGAAAGAGGCCGCGCTGACCATGCAGCAGGGCGGCGGCATCGGCTAT 146920 Query 26632 GACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTAAAGGGAGTGGAGAGCTTCT-CCAG 26690 || ||||| ||| | || ||||| ||||| ||| ||||| |||| | || | || Sbjct 146919 GATTTCTCGACCATCCGGCCCAAGGGTGCGGATGTGAAGGGCGTGGCG-GCGGATGCCTC 146861 Query 26691 CGGTCCTCTCACCTTTATGGATGTCTGGGACTCCATGTGCAAAACCATTATGTCTGCTGG 26750 || || || |||| ||||||||||||||| | ||||| || || ||||| || || Sbjct 146860 GGGCCCGCTGTCCTTCATGGATGTCTGGGACGCGATGTGTCGCACGATCATGTCCGCAGG 146801 Query 26751 CTCCCGTCGTGGAGCTATGATGGCCACCATGCGGTGTGATCATCCTGACATCATGGAGTT 26810 ||| || || || || |||||||| |||||||| || ||||| || ||| | | | || Sbjct 146800 CTCGCGCCGGGGCGCGATGATGGCGACCATGCGCTGCGATCACCCGGACGTGGAGCAATT 146741 Query 26811 TGTCACAGCCAAACAGGATCCTCTGCGACTCCGTAACTTCAACGTCTCAGTTCTCTGTAC 26870 || | ||||| ||||| || || || | |||||| | || || || || Sbjct 146740 CATCGCCGCCAAGTCCGATCCGGCCCGGCTGCGCATGTTCAACATGTCTGTCCTGGTCAC 146681 Query 26871 GGATGAGTTCATGGAAGCAGTGGCTGCTGACAGTGATTGGGATCTCATGTTCGATGGTAA 26930 || |||||||| || ||| || ||| | ||||| || | || || || || Sbjct 146680 CGACCCTTTCATGGAGGCCGTGAAGGCCGACGGGTCCTGGGACCTGGTCTTTGACGGCAA 146621 Query 26931 GGTCTACCAGACCATCAAAGCCAAAGAACTCTGGGAAACCATTCTCTGGAACACCTACAA 26990 |||||| || || | | || || || ||| | ||| | | ||||| | Sbjct 146620 GGTCTATCACACGCTTCAGGCGCGCGATCTGTGGAACCGCATCATGCAGGCGACCTATGA 146561 Query 26991 CTACGCTGAACCCGGTGTGATCTTCATTGATCGCATCAACAAGGAAAACAATCTTTGGTT 27050 ||||| || || |||||||||||||| || ||||||||| ||| ||||| || | | Sbjct 146560 TTACGCCGAGCCGGGTGTGATCTTCATCGACCGCATCAACCAGGCCAACAACCTGAGCTA 146501 Query 27051 CCTTGAAACCATTGCAGCAACAAATCCATGTGGTGAGCAACCGCTCCCTCCATATGGTGC 27110 ||||||||||| || || || || || || || || ||||| || || ||||| || Sbjct 146500 TTGCGAAACCATTGCCGCGACCAACCCCTGCGGGGAACAGCCGCTGCCGCCCTATGGGGC 146441 Query 27111 ATGTCTGCTCGGATCGGTGAATCTGGC 27137 || || || || ||||| || |||| Sbjct 146440 CTGCCTTCTGGGCTCGGTCAACTTGGC 146414 Score = 87.8 bits (96), Expect = 9e-13 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 27829 ATGCAGGCTGTGCTTCAGAAATGGGTAGACTCATCCATTTCTAAGACTGTCAATCTTCCT 27888 |||||||| | | ||||||||||| ||| || || || ||||| |||| || Sbjct 145758 ATGCAGGCGGCGGCGCAGAAATGGGTCGACAGCTCGATCTCGAAGACGATCAACTGCCCC 145699 Query 27889 GAAGACATCAGCTTTGATGACTTCAAAGCAGTCTATGATCACGCCTACACTACTGGCTGT 27948 || ||||| |||||| |||||||| | ||||| | |||| || ||||| Sbjct 145698 GAGGACATTTCCTTTGACGACTTCAAGGACGTCTACATGGAAGCCTGGGACACCGGCTGC 145639 Query 27949 AAAGGTTGCACAACCTATCGGCCAAACGACGTGACAGGTTCTGTCTTGTCCGTTGAAACC 28008 || || ||||| ||||| || || ||||||||||| || || ||| |||| || ||| || Sbjct 145638 AAGGGCTGCACGACCTACCGTCCGAACGACGTGACCGGGTCCGTCCTGTCGGTGGAATCC 145579 Query 28009 ---AAAGAAGAA 28017 ||||| ||| Sbjct 145578 TCGAAAGAGGAA 145567 >seq1 Length=7344524 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 73769 CGGAAGAGTGGCCGAGTCTGGCTGAAGGCACTGGTCTTGAAAACCAGCAAACCGAAAGGT 73828 |||| || |||| ||| || |||| ||||||||||||||||||||| ||||| |||| Sbjct 1879176 CGGAGGAATGGCAGAGC--GGTTGAATGCACTGGTCTTGAAAACCAGCGTACCGAGAGGT 1879233 Query 73829 TTCGTGGGTTCGAATCCCACCTCTTCCGCC 73858 || ||||||||||||| | || |||||| Sbjct 1879234 ACCGGGGGTTCGAATCCCTCTTCCTCCGCC 1879263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238628271118544