Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq571 116 1e-21 seq5 100 1e-16 seq285 82.4 3e-11 >seq571 Length=34005 Score = 116 bits (128), Expect = 1e-21 Identities = 264/392 (67%), Gaps = 10/392 (3%) Strand=Plus/Plus Query 55485 ATGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACACCGAGGAGCATCTGGACGCGCCG 55544 |||| ||||||||||| | ||| |||||| | | | ||||| |||| ||| Sbjct 26376 ATGGGGACCGGCGTCAATGCGCAATTGCGCCTGAAGGCGCTCCACCATCTCGACGTGCCA 26435 Query 55545 TGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGCCGCATCATCCGTCAGGGCAACCAGAAC 55604 ||| |||| | |||| |||||||||||||||||| || |||||||||||| | Sbjct 26436 TGGCTCCCCTCCCAGATCGAACAGCGCGAGGGCCGCATCGAGCGGCAGGGCAACCAGCAT 26495 Query 55605 AAGCAGGTGCGCATCCGCGCGTGGGCGAC-GAAGGGCAGCTACGACTCGACCATGTGGGG 55663 | || | ||| ||| | ||||| ||||| | | || || |||||| Sbjct 26496 GACGAGATCGATATCTTCGCCTATGCGACCGAAGGTTCGATG-GATGCGCAGATGTGGCA 26554 Query 55664 GATGAACGCCCGCAAGGCCCGCTTCATCGAACAGGCGCTCAACGGCGACGACAGC-GTGC 55722 || |||| ||||||||||||||||| | || || ||||||| ||| | |||| Sbjct 26555 GAACAACGAGCGCAAGGCCCGCTTCATTGCCGCTGCCCTTTCCGGCGAC-ACATCCGTGC 26613 Query 55723 GCTCGCTCGAGGACGTGTCCGAGGCATCGGC------GTTCGACATGGCCGCCGCGCTGG 55776 || |||||| || || ||||| ||| ||||| |||||| || | | Sbjct 26614 GCCGGCTCGAAGATTTGGGCGAGGGCCAGGCCAATCAGTTCGCCATGGCGAAAGCCATCG 26673 Query 55777 CGTCGGGCGACGAGCGCTATCTGAAGATGGCCGGCCTGAAGGCCGACGTCGAGCGCCTGG 55836 |||||||||| ||||| || ||| ||| || ||| | |||||||||| || || | Sbjct 26674 CGTCGGGCGATCAGCGCCTGATGCAGAAGGCGGGACTGGAAGCCGACGTCGCCCGGCTTG 26733 Query 55837 AGCGCCTGAGCTACGCGCACCACGACGACCAA 55868 | |||||| || |||||| | ||| || ||| Sbjct 26734 AACGCCTGCGCGCCGCGCATCGCGATGATCAA 26765 >seq5 Length=3486096 Score = 100 bits (110), Expect = 1e-16 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 9120 GTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCG 9179 || ||||||||||| || || || ||| |||| |||||| ||||| || | || Sbjct 756256 GTAAACAAAGTCATTCTAGTGGGTAATTGCGGCAGCGACCCAGAAACAAAGTATTTACCC 756315 Query 9180 AGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCG 9239 ||||| ||| | | ||| || || | || || |||| | || |||||| | Sbjct 756316 AGCGGAAGCGCGGTTACTAATCTCAGTATTGCTACCTCCGAAACATGGAAAGACAAGCAG 756375 Query 9240 AGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGCC 9299 | |||| || |||| || || |||||||| || | |||||| || || || Sbjct 756376 ACCGGCCAGCAGCAGGAGCGTACTGAATGGCACCGTGTTGTGTTCTTCAATCGTCTGGCT 756435 Query 9300 GAGATCGTCGACGAGCACCTTCGCAAGGGC-GCATCGGTCTACATCGAGGGGCGCATCAA 9358 ||||||| || ||| |||| || || ||| |||||| || ||||| || | | Sbjct 756436 GAGATCGCCGGCGAATACCTGAAAAAAGGTAGCAA-GGTCTATATAGAGGGT-GCGTTGA 756493 Query 9359 GA-CGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCG 9417 || |||| || ||||| | ||| ||||||||||| ||||| || ||||| || ||| Sbjct 756494 GAACGCGCAAATGGCAAGGTCAGGATGGCCAGGATCGTTACACCACAGAGATTGTTGCCA 756553 Query 9418 ACAGGATGCAGATGCTCG 9435 || ||||||||||||| Sbjct 756554 ACGAAATGCAGATGCTCG 756571 >seq285 Length=160511 Score = 82.4 bits (90), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 9307 TCGACGAGCAC---CTTCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAAGACGC 9363 ||| |||||| || ||||||||| | |||||| |||||||| | | | || | Sbjct 22667 TCGCCGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATCGAGGGCCAGCTGGAAACCC 22608 Query 9364 GGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGT 9412 | || ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 22607 GCAAATGGCAGGATCAGTCCGGCCAGGATCGCTATTCGACCGAGGTCGT 22559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200561410725552