Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq19 172 1e-38 seq5 134 4e-27 seq2 98.7 3e-16 >seq19 Length=1029424 Score = 172 bits (190), Expect = 1e-38 Identities = 238/331 (72%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 8777 TGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGG 8836 |||| | || |||||||||||||||||| ||||| | |||| | ||| ||| Sbjct 739518 TGATCATGGTCGACTACCTGCAGCTGATG-CGGGTACC--CGGCAACACCGAAGGCCGGA 739462 Query 8837 CCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTC 8896 | ||||| | | ||||| ||||| | || || ||||| || |||||| | | Sbjct 739461 CGGCCGAGATTTCGGAAATCTCGCGGTCCCTGAAGGGTATTGCCAAAGAACTCAGCTGCC 739402 Query 8897 CGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCG 8956 || | | |||||||| ||||| || || | || ||| | || || |||||||| || | Sbjct 739401 CGGTGGTGGCGCTGTCCCAGCTCAACCGGAGTCTTGAGCAGCGGCCCAACAAGCGCCCGG 739342 Query 8957 TCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTA 9016 | | |||||||| || || ||||| || ||||||||||| |||||||| ||| | ||| Sbjct 739341 TTAACTCCGATCTACGGGAATCGGGCGCCATCGAGCAGGACGCCGACGTCATCATGTTTG 739282 Query 9017 TCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCA 9076 | ||||| ||||||||||||||| |||| | || || | ||||| ||||||| Sbjct 739281 TGTACCGGGATGAGGTCTATAACGAAGACACGCCGGACAAGGGCATTGCCGAGATCATCA 739222 Query 9077 TTGCGAAGCAGCGAAACGGGCCGATTGGCAC 9107 ||| |||||||| ||||| || || ||||| Sbjct 739221 TTGGCAAGCAGCGGAACGGCCCCATCGGCAC 739191 >seq5 Length=3486096 Score = 134 bits (148), Expect = 4e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901 ||| || | || || || ||| | || ||||| | ||| ||| | ||| ||||| Sbjct 203640 GAGATCTCAGAGATTTCCCGCTCGCTGAAACAGGTGGCGCGTGAATTTGACTGCCCGATG 203699 Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 || ||||| |||||||| || || || | ||| | || ||||||||||| || | | Sbjct 203700 ATTGCGCTCTCGCAGCTAAACCGTGGCGTGGAGCAGCGGCCAAACAAGCGTCCAATGAAT 203759 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 || ||||| || || || |||||||| ||||| || |||||||| ||||| ||||| || Sbjct 203760 TCGGATCTTCGAGAATCAGGTGCGATTGAGCAAGACGCCGACGTTATCCTGTTTATTTAT 203819 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCG 9081 ||||||||| ||| ||| || || | || |||| ||||| || || | | Sbjct 203820 CGCGATGAGTACTACAACGAGGAAAGTCCGGACAAAGGTATTGCCGAGATTATTCTGGGC 203879 Query 9082 AAGCAGCGAAACGGGCCGATTGGCACC 9108 || ||||||||||| |||||||||| Sbjct 203880 AAACAGCGAAACGGCGAGATTGGCACC 203906 >seq2 Length=6328565 Score = 98.7 bits (108), Expect = 3e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 8876 TTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGA 8935 |||| ||||||||| | || |||||||||||||| |||||||| || | | || Sbjct 2414310 TTGCCAAGGAACTCCAGGTGCCGATCATCGCGCTTTCGCAGCTGTCCCGTCAGGTGGAAG 2414251 Query 8936 ATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGG 8995 ||| |||| ||||| | ||||| || ||||| || || ||| |||||||||||| Sbjct 2414250 CCCGCGACGACAAACGGCCGATGATGTCAGACCTGCGTGAATCCGGTTCGATCGAGCAGG 2414191 Query 8996 ATGCCGACGTGATCCTCTT 9014 | |||||||||||||| || Sbjct 2414190 ACGCCGACGTGATCCTGTT 2414172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127544491309872