Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq115 114 2e-20 >seq1 Length=7344524 Score = 145 bits (160), Expect = 1e-29 Identities = 331/494 (67%), Gaps = 8/494 (2%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| ||| ||| || |||| ||| | |||||| || | | || | ||| ||||| Sbjct 2686754 CTTCGGCTTT--CACTGTAAACTTAATTGGGTTCACAGCTGCTTTACTACGCAGGTAGTA 2686697 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || ||||| | || ||| |||| | |||||| || ||||| |||| | Sbjct 2686696 CATGCCTGTTTTGAGGCCTTGCTCCCAGGCGTAGAAGTGCATCGACGACAGCTTGCCAAA 2686637 Query 203953 G-TTGGGGTCGG--CCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCG 204009 | ||||| || | | | | | ||||| | |||||| || |||| | | |||| Sbjct 2686636 GGTTGGGTTCTGTACAAAGAG---GTTCATACTCTGGCTCTGACAGATGTATGCACCCCG 2686580 Query 204010 ATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 || || ||||||| ||||||| ||| || ||||| ||||||||| ||| || Sbjct 2686579 GTCGGCAGCCATATCGATAATGACGCGCTGGCTGATTTCCCATACCGTCTTGTACAGATC 2686520 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCT 204129 | | |||||| | ||| || | || ||||| |||||| |||||||||| | Sbjct 2686519 CTTTAATTCTTGAGGAATATCGTCAAAGCTCTGAATCGAACCGTTGGCGGCCATCAGGCG 2686460 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || | || || ||||| ||||| | | ||| || |||| |||||| ||| Sbjct 2686459 GTGCTTCATATCGTCGTTCCACAAGCCCAGACGGTTCAAATCGCGCAGCAGGTGCTTGTT 2686400 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | ||| || || || || ||| | ||| || | | ||| ||||| |||| || Sbjct 2686399 CACGATTACGAATTCACCAGAAAGCGTACGGCGGCTGTAGATATTGCTGGTGTATGGCTC 2686340 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| ||||||||||| | ||||||| ||| || || ||||| || || | || Sbjct 2686339 GAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAGAAGCAGTTGGCATTGGCGCTACCAG 2686280 Query 204310 CAGGGAGTTGCGCA 204323 || | |||||||| Sbjct 2686279 CAAGCTGTTGCGCA 2686266 >seq115 Length=378902 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||| ||||| || |||||| |||||| |||||||| || ||||| |||||| || Sbjct 238473 AACAGTAGGCAAGCGAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTCGAG 238414 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CC 160032 | | ||||| ||||| | || ||| ||||||||| || | ||| ||| |||| || Sbjct 238413 AAGCACAGGCCGGGCATCAGGCCGCGCTTTTTGAGCCAGAAGACGGC-GCAGAAGCTGCC 238355 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 | || ||||| |||||||||||||| ||||| ||||||| ||| Sbjct 238354 GGAGAAGAAGATGCCCTCCACGGCCGCGAACGCAACGAGCCGCTC 238310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795147924329920