Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq53 152 6e-32 seq36 140 4e-28 seq63 136 4e-27 seq58 82.4 9e-11 >seq53 Length=625924 Score = 152 bits (168), Expect = 6e-32 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 125432 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 125491 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||||| ||| | || Sbjct 125492 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 125550 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | |||||| | ||||| || | ||||||||| |||||||| || || || | Sbjct 125551 CGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGA 125610 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 125611 CGAAGATTTGCAT 125623 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 124748 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 124807 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||||| ||| | || Sbjct 124808 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 124866 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | |||||| | ||||| || | ||||||||| |||||||| || || || | Sbjct 124867 CGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGA 124926 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 124927 CGAAGATCTGCAT 124939 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 124976 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 125035 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||||| ||| | || Sbjct 125036 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 125094 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | |||||| | ||||| || | ||||||||| |||||||| || || || | Sbjct 125095 CGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGA 125154 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 125155 CGAAGATCTGCAT 125167 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 125204 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 125263 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||||| ||| | || Sbjct 125264 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 125322 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | |||||| | ||||| || | ||||||||| |||||||| || || || | Sbjct 125323 CGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGA 125382 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 125383 CGAAGATCTGCAT 125395 Score = 136 bits (150), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| | Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||||| ||| | || || Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 126211 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| || | ||||||||| |||||||| || || || || Sbjct 126212 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACG 126271 Query 46583 AAGATTTGC 46591 || || ||| Sbjct 126272 AAAATCTGC 126280 >seq36 Length=729648 Score = 140 bits (154), Expect = 4e-28 Identities = 147/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || ||||| |||| || ||||||||||||||||| | Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||| || | ||| | || |||||||||| |||||||| ||| | || || Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 220421 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| |||| |||||||| |||||||| || || || || Sbjct 220420 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220361 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 220360 AAGATCTGCAT 220350 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||| |||||||| |||| || ||||||||||||||||| Sbjct 222014 CTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 221955 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | ||| | | |||||||||| |||||||| ||| | || Sbjct 221954 GATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 221896 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | |||||| | ||||| |||| |||||||| |||||||| || || || | Sbjct 221895 CGTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 221836 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 221835 CGAAGATCTGCAT 221823 Score = 134 bits (148), Expect = 2e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || ||||| |||| || |||||||||||||| || | Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||| || | ||| | || |||||||||| |||||||| ||| | || || Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 220910 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| |||| |||||||| |||||||| || || || || Sbjct 220909 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220850 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 220849 AAGATCTGCAT 220839 Score = 134 bits (148), Expect = 2e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || ||||| |||| || |||||||||||||| || | Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||| || | ||| | || |||||||||| |||||||| ||| | || || Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 221402 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| |||| |||||||| |||||||| || || || || Sbjct 221401 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 221342 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 221341 AAGATCTGCAT 221331 Score = 116 bits (128), Expect = 4e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| |||||||| |||| || |||||||||||||| || | Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || |||||||||| ||| || | ||| | || || Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCA-CGCCG 219948 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || ||||| | |||||||| |||||||| || || || || Sbjct 219947 TCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 219888 Query 46583 AAGATTTG 46590 || || || Sbjct 219887 AAAATCTG 219880 >seq63 Length=566113 Score = 136 bits (150), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||||||||||||| || ||||| |||| || |||||||| |||||||| | Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| | ||| | || || Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCA-CGCCG 329559 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| || | |||| ||| |||||||| || || || ||| Sbjct 329560 TCGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACA 329619 Query 46583 AAGATTTGC 46591 ||||| ||| Sbjct 329620 AAGATCTGC 329628 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| || |||||||| || ||||| Sbjct 328856 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAA 328915 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| ||||||| ||| | || Sbjct 328916 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGGCTTCA-CGC 328974 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||||| | ||| || || | ||||||||| || ||||| || || || | Sbjct 328975 CGTCGATCGTGTCGGAGGGTTCTACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGA 329034 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 329035 CGAAGATCTGCAT 329047 >seq58 Length=603131 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46399 ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGC 46458 |||| | ||||||| | ||||||||||| || || | || || ||||| |||| || Sbjct 11277 ACTCACATTTTGGACTTGATAGTCGGATAGCGTACGGTTGTTCTCCAGCTGTCTGCCTGC 11218 Query 46459 GAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAG 46518 ||| || | | |||||||| ||| || | | ||||||||| || ||||| ||| | Sbjct 11217 GAAGATGAGGTGCTGCTGGCCGGGTGGGATTCCGTCCTTGTCCTGGACCTTCTGCTTCAC 11158 Query 46519 CGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | | ||| || || ||||| ||||| ||||| || | || || | || || Sbjct 11157 GGACTCGATCGTATCTGACGGCTCCACGTCCACGGTGATTGTCATTCCAGTGATGGTCTT 11098 Query 46579 AACAAAGATTTGCAT 46593 || |||| ||||| Sbjct 11097 GACGAAGACCTGCAT 11083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233228068640