Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq115 188 7e-43 seq53 167 2e-36 seq36 138 1e-27 seq63 136 4e-27 >seq115 Length=378902 Score = 188 bits (208), Expect = 7e-43 Identities = 310/440 (70%), Gaps = 14/440 (3%) Strand=Plus/Minus Query 132816 CTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTG-- 132872 ||||||| | || |||||| | ||| ||| || ||| |||| |||| | ||| Sbjct 238543 CTCGATGTCCACGGCGTCGCAAATGATCTCCGCCACCCGCTCCGC---CGGCAGCTTGTT 238487 Query 132873 CACCAAATGCTT---GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 ||||| |||| ||||| | |||||| |||||| |||| ||||||||| | | Sbjct 238486 CACCA---GCTTACGGAACAGTAGGCAAGCGAAGTCGGTGTGCAGGCCCTCGTCGCGGCT 238430 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 ||||| ||||| ||| || ||||||||| |||||||| ||||||||||| || | Sbjct 238429 GATGAGCTCGTTCGAGAAGCACAGGCCGGGCATCAGGCCGCGCTTTTTGAGCCAGAAGAC 238370 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 |||| ||| ||||| || ||||||| |||||| ||||||||||| || || || ||||| Sbjct 238369 GGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCCACGGCCGCGAACGCAACGAGCCGCTC 238310 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG-A 133108 |||| | || | | | ||| ||||||||||| ||| || ||| | | Sbjct 238309 CGCGAAGGACGCCAGGTCCGGGTTGCACCACCGCAGCGCCCACCTCGCC-TTCCTTCGCA 238251 Query 133109 CGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGT 133168 |||| |||| || || |||||||| |||| || ||||| || | |||| Sbjct 238250 CGCAAGGCACGGTCTCCATGGCGTTGAACAGGTGGGCCTTCTCGGACGCGTCCTTGACGT 238191 Query 133169 AGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGC 133228 |||||||||| || |||| || ||| | |||||| |||||||| || |||| Sbjct 238190 AGGTGTCGATCAGCAGACTGTACACCTCGCTGTGGATGTTCTCGATGGCGATCTGGAAGC 238131 Query 133229 CGTAAAAGCACCGCGCCTCG 133248 |||| ||||||||||||||| Sbjct 238130 CGTAGAAGCACCGCGCCTCG 238111 Score = 129 bits (142), Expect = 6e-25 Identities = 122/153 (80%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| || ||| Sbjct 237746 TCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGGACGTGCTTGACGAAGTGTCGC 237687 Query 133348 TCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGT-GTCCTTGGACAGGTCCACCTCCTCGAC 133406 |||| || || || ||||||||| | || ||| | | |||||||| ||| || | Sbjct 237686 TCGTCATCCGACAGGCCCTCCCAGTC-CTTGTAGTCGTGCGCCAGGTCCAGCTCTTCCGC 237628 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||| || | ||||| || ||||||||||| Sbjct 237627 AGTCCAGAAGCATGCCTCCGCCTTTTTGTACAT 237595 >seq53 Length=625924 Score = 167 bits (184), Expect = 2e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| |||||||| ||||||| ||| || | Sbjct 125623 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125564 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 125563 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 125505 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 125504 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAA 125445 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| ||||||| || | |||||| Sbjct 125444 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTG 125411 Score = 163 bits (180), Expect = 3e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| |||||||| ||||||| ||| || | Sbjct 124939 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 124880 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 124879 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 124821 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 124820 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAA 124761 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| ||||||| || | |||||| Sbjct 124760 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTG 124727 Score = 163 bits (180), Expect = 3e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| |||||||| ||||||| ||| || | Sbjct 125167 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125108 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 125107 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 125049 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 125048 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAA 124989 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| ||||||| || | |||||| Sbjct 124988 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTG 124955 Score = 163 bits (180), Expect = 3e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| |||||||| ||||||| ||| || | Sbjct 125395 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125336 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 125335 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 125277 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 125276 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAA 125217 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| ||||||| || | |||||| Sbjct 125216 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTG 125183 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || ||||| || || || |||||||| |||||||| ||||||| ||| || | || Sbjct 126280 GCAGATTTTCGTGAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGA 126221 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| | Sbjct 126220 CA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGC 126162 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 |||| || || | ||| ||||| |||||||| |||| |||||||||| ||||||||||| Sbjct 126161 AGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACA 126102 Query 38425 TCCAAAAGG 38433 |||| |||| Sbjct 126101 TCCAGAAGG 126093 >seq36 Length=729648 Score = 138 bits (152), Expect = 1e-27 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || ||||| || || ||||||||||| ||||||||| | || |||||| || | ||| Sbjct 219880 CAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTAGATGTCGAGCCCTCGGAC 219939 Query 38307 AGCGTGCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | || | | || | ||| ||||||||| ||||| ||||| || ||| | ||||| || Sbjct 219940 A-CGATCGACGGCGTGAAGCAAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 219998 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| || || | || ||||| |||||||| |||| ||||| || | |||||||||||| Sbjct 219999 GCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACAT 220058 Query 38426 CCAAAAGG 38433 ||| |||| Sbjct 220059 CCAGAAGG 220066 Score = 138 bits (152), Expect = 1e-27 Identities = 149/192 (78%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | ||||| ||| || | Sbjct 220350 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220409 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | || | ||| | || |||| ||||| ||||| || |||||| || | Sbjct 220410 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGATC 220467 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| |||||||| | |||||||| Sbjct 220468 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACA 220527 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 220528 ACATCCAGAAGG 220539 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | ||||| ||| || | Sbjct 221823 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221882 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | || | ||| | || |||| ||||| ||||| || |||||| || | Sbjct 221883 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTAT-CCCGCCTGATC 221940 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 221941 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACA 222000 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || || |||| || || | || || || || | ||||| Sbjct 222001 ACATCCAGAAAGAGTCGACTCTCCACCTTGTTCTTCGCCTGCGCGGCGG 222049 Score = 134 bits (148), Expect = 1e-26 Identities = 148/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | ||||| ||| || | Sbjct 220839 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220898 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | || | ||| | || |||| ||||| ||||| || |||||| || | Sbjct 220899 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGATC 220956 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| |||| |||||||| | |||||||| Sbjct 220957 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACA 221016 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 221017 ACATCCAGAAGG 221028 Score = 134 bits (148), Expect = 1e-26 Identities = 148/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | ||||| ||| || | Sbjct 221331 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221390 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | || | ||| | || |||| ||||| ||||| || |||||| || | Sbjct 221391 GACA-CGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGATC 221448 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| |||| |||||||| | |||||||| Sbjct 221449 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACA 221508 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 221509 ACATCCAGAAGG 221520 >seq63 Length=566113 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || |||||||| | ||||| || || || Sbjct 329047 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACGCTTGACGTAGAACCCTCC 328988 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | ||| || |||| ||||| ||||| || ||| | ||||| Sbjct 328987 GACA-CGATCGACGGCGTGAAGCCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 328929 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 328928 GCAGCGCCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAA 328869 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| ||||| |||| || || | |||||| Sbjct 328868 CATCCAGAAGGAGTCGACTCTCCACCTTGTGCTG 328835 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || || || || || ||||||||||| ||| ||||| | ||||| ||| || | || Sbjct 329628 GCAGATCTTTGTCAAGACTCTCACGGGCAAGACCGTCACCCTTGACGTGGAGCCCTCGGA 329569 Query 38306 CAGCGTGCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || || | | || | ||| | || |||| ||||| ||||| || ||| | ||||| | Sbjct 329568 CA-CGATCGACGGCGTGAAGCATAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGC 329510 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 |||| || || | ||| || || |||||||| |||| |||||||| | ||||||||| | Sbjct 329509 AGCGCCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAATA 329450 Query 38425 TCCAAAAGG 38433 ||||||||| Sbjct 329449 TCCAAAAGG 329441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168223418880