Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq3 100 4e-16 seq466 84.2 3e-11 seq455 84.2 3e-11 seq412 84.2 3e-11 >seq3 Length=4400433 Score = 100 bits (110), Expect = 4e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 189963 TGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTAGTG 190021 |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||||| ||| Sbjct 3471748 TGGTGCGGATGGAGGGACTTGAACCCCCACGCCTCGCGGCGCCAGAACCTAAATCTGGTG 3471689 Query 190022 CGTCTGCCAATTTCGCCACATCCGC 190046 ||||| ||||||||||||||||||| Sbjct 3471688 CGTCTACCAATTTCGCCACATCCGC 3471664 >seq466 Length=59367 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 189960 ATCTGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTA 190018 || |||||||| || ||||| ||||| ||||||| ||||| ||||||||||||| Sbjct 49766 ATGTGGTGCGGGTGAAGGGACTTGAACCCCCACGCCTTGCGGCGCCAGAACCTAAATCTG 49825 Query 190019 GTGCGTCTGCCAATTTCGCCACATCCGC 190046 |||||||| |||||| ||||||| |||| Sbjct 49826 GTGCGTCTACCAATTCCGCCACACCCGC 49853 >seq455 Length=62500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| |||||| ||| ||||||| |||||| | ||||||||||| | |||||||||| Sbjct 19063 TGGTGAGCCGTGCAGGATTCGAACCTGCGACCCACTGATTAAAAGTCAGTTGCTCTACCA 19122 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||||||| Sbjct 19123 ACTGAGCTAACGGC 19136 >seq412 Length=80000 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| |||||| ||| ||||||| |||||| | ||||||||||| | |||||||||| Sbjct 39570 TGGTGAGCCGTGCAGGATTCGAACCTGCGACCCACTGATTAAAAGTCAGTTGCTCTACCA 39629 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||||||| Sbjct 39630 ACTGAGCTAACGGC 39643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720723005324160